Thalassospira marina: CSC3H3_17775
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Entry
CSC3H3_17775 CDS
T05224
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
thac
Thalassospira marina
Pathway
thac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CSC3H3_17775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thac03019
]
CSC3H3_17775
Enzymes [BR:
thac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CSC3H3_17775
Messenger RNA biogenesis [BR:
thac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CSC3H3_17775
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
UTP25
Motif
Other DBs
NCBI-ProteinID:
AUG54360
LinkDB
All DBs
Position
complement(3922305..3924125)
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AA seq
606 aa
AA seq
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MTNFEGLNLIEPLLRNVEASGFTTPTDIQAASIPALLEGKDLMGISHTGGGKTAAFCLPL
LQRLAENPKRPAPGQPRALILAPTRELANQIGQCLRDFKKGIRLFSSVVFGGAPMGPQIQ
ELRRGCDILVATPGRLLDHMARNTVRFDDVEVFVLDEADRMLDMGFSEDVLTVAELLPYK
HQTVMFSATMPDAVRHLTDRLLKDPVKVQTAPQASVTERVTQRGMFVTRQNKTALLLQLL
QREGSDRVLVFTKTKLDADELAFQLQDAGVQSDAIHGDKQQRIRQKILRNFRDGRFPVLV
ATDVAARGIDVPGISHVVNYDLPTDPENYVHRIGRTGRGGADGIAISFCEPRDVRHLRNI
ERTIRQDVDIDEDHEFHVSPPAARRGAGAGGRDDRNGGRGGRGRGGFAGGRGEGRGRGGF
GGGRGGSGGGFGGRNEGDAGRRFARRDDAFAANDRGDRSDRGDRGDRAEFAARKPRFDGE
ERGGFSARPNRERFNRDDRDGASAPRGDRPNRGDRNDRGDRAERGDRPAQFRSRNDRNDR
NDRGGDRGPREERGERRFAGKPRDAGRTEGFKFREGGEGRGKRDFGERSRNQGGRSGQQG
LKRRSA
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atgacgaattttgaagggctcaatctgatcgagcctctgctgcgcaacgtcgaagcttcc
ggttttaccactccgaccgacattcaggctgcctctattccggcgctgcttgaaggcaag
gacctgatgggcatttcccatacgggtggtggcaaaacggctgctttctgcctgccgttg
cttcagcgtcttgctgaaaaccccaaacgccctgcaccgggtcagccgcgcgctcttatc
cttgcgccgacccgcgaactggccaaccagatcggccagtgcctgcgtgatttcaaaaaa
ggcatccgcctgttttcttcggttgtttttggtggcgcgccgatgggcccgcagatccag
gaactgcgccgtggctgtgatattcttgtcgcaaccccgggccgtctgcttgaccatatg
gcacgtaacaccgtccgttttgacgatgttgaagtcttcgtccttgatgaagctgaccgt
atgctcgatatgggcttctccgaagacgtactgacggttgctgaattgctgccatacaaa
catcagaccgtgatgttctcggcgaccatgcccgatgctgttcgccacttgaccgaccgt
ctgctcaaagacccggtaaaggttcagaccgcaccgcaggccagcgtgaccgaacgtgtg
acccagcgtggcatgtttgtgacccgtcagaacaaaactgcccttctgttgcagcttctg
cagcgcgaaggcagcgaccgcgttctggttttcaccaaaaccaaactggatgccgacgaa
ctggctttccagcttcaggatgccggtgtgcagtctgatgccatccatggtgacaaacag
cagcgcattcgccagaagatcctgcgcaatttccgcgatggccgtttcccggttctggtt
gcaactgacgttgctgcacgtggtattgacgttccgggcatttcgcacgtcgtgaactac
gacctgccgaccgacccggaaaactatgtccaccgtatcggccgtaccggccgtggtggc
gcagacgggattgcgatttccttctgcgaaccgcgtgatgtccgtcatctgcgcaatatc
gaacgcaccatccgccaggatgttgatattgacgaagatcatgaattccacgtttcgccg
cctgccgcacgtcgtggtgctggtgccggtggccgtgatgaccgtaatggtggtcgtggt
ggccgtggtcgcggcggttttgccggtggccgtggtgaaggtcgcggtcgtggtggtttc
ggcggtggccgtggcggtagtggtggcggctttggtggccgtaacgaaggtgatgccggt
cgtcgttttgcacgccgtgatgatgcctttgcagccaatgaccgtggtgatcgttcggat
cgtggcgatcgtggtgaccgcgctgaatttgcagcccgcaagccgcgctttgacggtgaa
gaacgcggtggtttttcggcccgtccgaatcgcgaacgttttaaccgtgatgaccgcgac
ggggcatcggcaccgcgtggtgaccgcccgaaccgtggcgatcgcaatgaccgtggtgat
cgcgctgagcgcggtgatcgtccggcgcagttccgttcacgcaatgaccgcaatgatcgg
aatgaccgcggtggtgatcgtggtccgcgtgaagaacgtggtgaacgccgctttgctggc
aagccgcgtgatgccggtcgtaccgaaggcttcaaattccgcgaaggcggcgaaggccgt
ggtaaacgcgattttggcgagcgttcccgcaatcagggtggtcgttccggtcagcagggc
ctgaaacgccgttcggcataa
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