Thioalkalivibrio sp. K90mix: TK90_0370
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Entry
TK90_0370 CDS
T01174
Name
(GenBank) RNA polymerase, sigma 54 subunit, RpoN
KO
K03092
RNA polymerase sigma-54 factor
Organism
tkm
Thioalkalivibrio sp. K90mix
Pathway
tkm02020
Two-component system
tkm02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
tkm00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
TK90_0370
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
TK90_0370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tkm03021
]
TK90_0370
Transcription machinery [BR:
tkm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
TK90_0370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_38
SHNi-TPR
Motif
Other DBs
NCBI-ProteinID:
ADC70885
UniProt:
D3SDR5
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All DBs
Position
390955..392448
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AA seq
497 aa
AA seq
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MLKPGLNLQLGQTLTMTPQLQQAIRLLQLSTLELQAEIQQALESNPMLEQVEDEGEEAPP
ERPEEGGERVDGDRMQADTAGDDVIPEELSTDSRWDDIYEPAPSPRGLDDRDPLENTSDG
EDEGLQDHLLWQLHLSHLTPRDQRIGAALIDAISPDGYLDSELEALAEMISQGEDEPVGV
DEVEAVLHWIQQCDPLGVGARDLRECLEIQLRHLAPDAPARDAARAILENGMESLAKRDY
RALQRQSGVRDPDELARALDLIRTLNPRPGAQISESTSEYVVPDVYVRHDRDGWRVDLNP
EIAPRIRINDLYAGMVRQVSDARDSAFMRDQLQEARWFLKSLHSRNDTLLRVAQAIVVRQ
QGFLEHGEVAMQPLILRDIAETLEMHESTISRVTTQKYMHTPRGVFEFKYFFSSHVGTAD
GGECSATAIRAMIRELIGGETPNKPLSDAKLAQILSDRGINVARRTVAKYREAMHIPSSS
ERRQMASMPSGTKQKGA
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgctgaagcccgggcttaatctgcagctggggcagacgctgacgatgaccccgcagctg
caacaggcgatccgtctgctgcagctttccacgctggagttgcaggcggagatccagcag
gcgctggaaagcaaccccatgctcgagcaggtggaggacgagggcgaggaggccccgccc
gagcgcccggaggaagggggcgaacgggtcgacggggatcgcatgcaggccgacacggct
ggcgatgacgtgatccccgaggagttgagcaccgacagtcgctgggacgacatctacgag
cccgccccgagcccacgcggcctggacgaccgcgacccgctggagaatacctccgacggc
gaggacgagggcctgcaggaccacctgctctggcagctgcatctgagccacctgacccca
cgagaccaacggatcggggcggcgctgatcgacgcgatcagcccggacggctatctggac
agtgaactcgaggcgctggcggagatgatcagccagggcgaagacgagcccgtgggggtc
gacgaggtcgaggcggtgctgcactggattcagcagtgcgacccgctgggcgtcggtgcg
cgggacctgcgcgagtgcctggagatccagctgcgccatttggcgccggatgccccggcg
cgtgacgcggctcgagccatcctggaaaacggcatggagagcctggccaagcgggactac
cgagccctgcagcgccagtccggcgtgcgcgacccggacgagctggcgcgggcgctggac
ctgatccgcaccctgaatccgcggcccggtgcccagatcagcgagtccacttcggaatat
gtggtgccggatgtctatgtccgccatgaccgcgatggctggcgcgtggacttgaacccg
gagattgcgccgcgcattcgcatcaacgatctctatgcgggcatggtgcggcaggtctcc
gatgcgcgtgatagcgcgtttatgcgcgatcagttgcaggaggcgcgctggttcctgaag
agcctgcacagccggaacgacaccctgctgcgggtcgcccaggccatcgtcgtgcgccag
caggggtttctcgagcatggtgaggttgccatgcaaccgctgatcctgcgcgatatcgcc
gagaccctggagatgcacgaatcgaccatctcgagggtgactacacagaaatacatgcac
accccgcgtggggtattcgagttcaagtacttcttttccagtcatgttggcacagccgat
ggcggcgaatgctcggcgaccgcgatccgtgccatgattcgggaattgattggtggcgag
accccgaacaagccactgagtgatgcaaaactggcccagatcctgtcggatcggggcatt
aatgtggcccgacgcaccgtggccaagtaccgcgaggctatgcacataccgtcttccagc
gaacgccggcagatggcgagtatgcccagtggaaccaagcaaaaaggagcctga
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