Trichechus manatus latirostris (Florida manatee): 101341941
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Entry
101341941 CDS
T05135
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
tmu
Trichechus manatus latirostris (Florida manatee)
Pathway
tmu03008
Ribosome biogenesis in eukaryotes
tmu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tmu00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
101341941
09123 Folding, sorting and degradation
03018 RNA degradation
101341941
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tmu03019
]
101341941
03009 Ribosome biogenesis [BR:
tmu03009
]
101341941
03016 Transfer RNA biogenesis [BR:
tmu03016
]
101341941
03036 Chromosome and associated proteins [BR:
tmu03036
]
101341941
Messenger RNA biogenesis [BR:
tmu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
101341941
mRNA degradation factors
5'-3' decay
5' exonucleases
101341941
Ribosome biogenesis [BR:
tmu03009
]
Eukaryotic type
Pre-60S particles
RNases
101341941
Transfer RNA biogenesis [BR:
tmu03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
101341941
Chromosome and associated proteins [BR:
tmu03036
]
Eukaryotic type
Gene silencing
piRNA pathway
101341941
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
101341941
NCBI-ProteinID:
XP_023595096
UniProt:
A0A2Y9RN60
LinkDB
All DBs
Position
Unknown
AA seq
1707 aa
AA seq
DB search
MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKI
FTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKAIEKGE
TLPTEARFDSNCITPGTEFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHK
IMEFIRSEKAKPDHDPNTRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKKTQRVCA
PEETTFHLLHLSLMREYIDYEFSVLKDKISFKYDIERIIDDWILMGFLVGNDFIPHLPHL
HINHDALPLLYGTYITILPELGGYINESGHLNLPRFEKYLVKLSDFDREHFSEVFVDLKW
FESKVGNKYLNEAAGAAAEEAKNYEEKKKSKGEENVCWAALDKNESEAATSKDNLEDETE
DDDLFETEFRQYKRTYYMTKMGVDVVSDDFLADQAACYVQAIQWILHYYYHGVQSWSWYY
PYHYAPFLSDIRNISTLKIHFELGKPFKPFEQLLAVLPSASRNLLPACYQHLMTSEDSPI
IEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMESCNHSLKKEERKRNQHSECLMY
WYDRDTDFTYPSPWPEKFPDIQRCCTRYKIISLDAWRVDISKNKITKVDQRAVYFCGFPT
LKHIKHKFFLKKSGVQVFQQSSRGENMMLEILLNADSDELSIENVASSALGKSVFVNWPH
LEEARVVAVSDGETKFYLEEPPGTQKLYLGKTTPPSKVVYLGDKEQSNWTKEVQGISEHY
LRRKGIIINETSAVIYAQLLTGRKYQINQNGEVRLEKQWSKQVLPFVYQTVVKDIRAFGS
RFSNIKTLDDLFPPRSMVFMLGTPYYGCTGEVQDSCDVITEGRIRVVFSIPCEPNLDALI
QNQHKYSIKYNPGYMLASRLGVSGYLVSRFTGSIFIGRGSGRNPHGDHKANVGLNLKFNK
KNEEVPGYTKKVGSEWMYSSAVEQLLAEYLERAPELFSYIAKNSQEDVFYEDDIWPGENE
NGAEKVQEIITWLKGHPVSTLSRSSCDLQILDAAIVEKIEEEVEKCKQRKNNKKVRVTVK
PHLLYRPLEQQHGVIPDRDAEFRLFDRVVNVRENFSVPVGLRGTIIGIKGANREADVLFE
VLFDEEFPGGLTIRCSPGRGYRLPTSALVNISHGSRSETGNQKLTAIVKPQPAVNHYSLN
SSILSGHLGGLNHSPQLRFVPTQVPAKEDDEFCNIWQSLQGSGKVQHFQPAIQEKGAVLP
QEISQVTQLHKSGINDSSIKGQQRKHDPHRKFKEECKSPKNECRSQKMSNKQPNPGIENF
LASLNISKENEVQASHHKEPPSEEHLSPQSFAMKGTRMLKEILKIDGAETVDHKSEMKQF
GNEVTVSSNRRDEYGPSSQPKQNKKLASYMNKSHSANEYHNVPSMDNVCWPTASQMPSVP
TSVTELSRICSLVGMPQPDFSFLRTPQTMTVCQVKLSNGLLVHGPQCHSENEAKEKAAFF
ALQQLSSLGVNFSVPLPIFPNYPPAVPPGTIPPVFPQPTGWDHYGSNLAFGAASMMPSSS
HLFASTPWAPPATVPGKPFHHASYPRTMPMAGGIAAGVHSQFIPLQVTKKRVANKKNFEN
KEAQSSSQAAPRQTSQPASSDITKVMPQESSSASVKSPHITQPVSSFQAEAASQGHSMSY
HKSIPSSSSRRKPRKLAVNFGVSKPSE
NT seq
5124 nt
NT seq
+upstream
nt +downstream
nt
atgggagtccccaagttttaccgatggatctcggagcggtatccctgcctcagcgaagtg
gtcaaagagcatcagattcctgaatttgacaacttgtacctggatatgaatggaattata
catcagtgctcccatccaaatgatgatgatgttcacttcagaatttcagatgataaaatc
tttactgatatttttcactacttggaggttttgtttcgcattattaaacctagaaaagtg
ttctttatggctgttgatggtgtggctcctcgagcaaaaatgaaccagcagcgtgggagg
cgttttaggtcagcaaaggaggcagaagacaaaatcaaaaaggcaatagaaaagggagaa
actcttcctacagaggcccgatttgattccaactgcattacaccagggactgaattcatg
gccaggttacatgaacatctgaagtattttgtaaatatgaagatttccacagacaagtca
tggcaaggagttaccatctacttctcaggccatgagactcctggagaaggagagcacaaa
atcatggaatttatcagatccgagaaagcaaagccagatcatgatccaaataccagacac
tgtctttatggtttagatgctgacttgattatgcttgggttaacaagtcacgaggctcat
ttctctcttttaagagaagaggttcggtttggtggcaaaaaaacacaaagggtatgcgca
ccagaagaaaccacatttcacctcctgcacttgtctttaatgagagagtatattgattat
gagttttcagtattaaaagacaagatctcatttaaatatgatattgaaaggataatagat
gattggattttgatgggatttcttgttggcaatgattttattcctcatctacctcattta
catattaatcatgatgcactgcctcttctttatggaacatatattaccatcctgccagaa
cttgggggttatatcaatgaaagtgggcatctcaacttacctcgatttgagaaatacctt
gtaaaactatcagattttgatcgtgagcacttcagtgaagtttttgtggacctaaagtgg
tttgaaagcaaagttggtaacaagtacctcaatgaagcagcaggtgccgcagcagaagaa
gccaagaactacgaggaaaagaaaaaatcaaagggcgaggaaaacgtctgttgggctgct
ttagacaaaaatgaatctgaagcagcaacatctaaggataatttggaagatgagactgaa
gatgatgacctatttgaaactgagtttagacaatataaaagaacttattacatgacaaag
atgggagttgatgtagtgtctgatgactttctggctgatcaagctgcatgttatgttcag
gcaatacagtggattttgcactattactatcatggagttcagtcctggagctggtattac
ccttatcattatgcaccttttctgtcagatatccggaacatcagtacgcttaaaatccat
tttgagctaggaaaaccttttaagccattcgagcagcttcttgctgtacttccatcagct
agcagaaatttgcttcctgcgtgttaccagcatttgatgaccagtgaagactcgccaatt
atagaatactatccacctgattttaaaactgacctaaatgggaaacaacaggaatgggaa
gctgtggtattaataccttttattgatgagaaacgattgttggaagccatggagtcatgt
aaccactccctcaaaaaagaagagaggaaaagaaaccaacatagtgagtgcctaatgtac
tggtatgatagagacacagacttcacctacccctcgccatggccagaaaaattccctgac
atacaacgatgttgcacaaggtacaaaataatatctttagatgcttggcgtgtagacata
agcaagaacaaaataaccaaggttgaccagagggcagtatatttctgtggatttcctact
ctgaaacacatcaaacacaaattttttttgaagaaaagtggggtacaagtattccagcaa
agcagtcgtggagaaaacatgatgttggaaatcttactcaatgcagactcggatgaactt
agtatagaaaatgtagcttcatcagcgcttggaaagtctgtctttgttaattggcctcac
cttgaagaagctagagttgtagctgtgtcagatggggaaactaagttttacttggaagaa
cctccaggaacacagaagctttatttgggaaaaactaccccaccatctaaagtggtctat
cttggagataaagaacaatctaactggacaaaagaagtacaaggaatttcagaacattac
ctgagaagaaaaggaataataataaatgaaacatctgcagttatatatgctcagttactc
acaggtcgtaaatatcaaataaatcaaaatggtgaagttcgactagagaaacagtggtca
aaacaagttcttccttttgtttatcaaactgttgttaaagacatccgagctttcggctcc
cgtttctccaatatcaaaacattggatgacttatttcctcctagaagtatggtctttatg
ctgggaaccccctattatggctgtactggagaagttcaagattcatgcgatgtgattaca
gaaggtaggattcgtgtggttttcagcattccgtgtgaacctaatcttgatgctttaatt
cagaaccagcataaatattctataaagtacaacccaggatatatgttggccagtcgcctt
ggagtgagtggataccttgtttcaaggtttacaggaagtatttttattggaagaggatct
gggagaaaccctcatggagaccataaagcaaatgtgggtttgaatctcaagttcaacaaa
aaaaatgaggaggtgcctggatataccaagaaagttggaagcgaatggatgtattcatct
gcagtagaacaactccttgcagaatacttagagagagctccagaactctttagttatata
gccaaaaatagccaagaggatgtgttctatgaagatgacatttggccaggagaaaatgag
aatggtgctgagaaagttcaagaaattattacttggctaaagggacatcctgtcagtact
ttgtctcgttcttcttgtgatttacaaattctggatgcagctattgtggagaagatcgag
gaagaagtcgagaaatgcaagcaaaggaagaataataagaaggtacgagtgacagtgaag
ccccatttgctatacagacctttagaacagcaacacggagtcattcctgatagggatgca
gaatttcgtctctttgaccgtgttgtaaatgtgagagagaacttttcagttcctgttggc
cttcgaggcaccatcataggaattaaaggggctaatagagaagctgatgtactatttgaa
gtattatttgatgaagaatttcctggaggtttaacaataagatgctcacctggtagaggt
tatcgactgccaacaagtgccttagtgaacatttctcacgggagtcgctctgaaaccgga
aaccagaagttgacagccatagtgaaaccacaaccagctgtgaatcactacagcttgaat
tcctccattttgtctgggcatttgggaggccttaaccattcccctcaattgcgttttgtt
cctactcaagtacctgctaaagaagatgatgaattttgcaacatttggcagtccttacaa
ggatctggaaaggttcaacactttcagccagctattcaagagaagggtgcggttctacct
caagaaataagtcaagtaactcaacttcataaatctggcattaatgacagcagtataaaa
ggtcagcaaagaaaacatgaccctcacagaaaatttaaagaagaatgtaagagtcctaaa
aatgagtgtcgatcacaaaaaatgtcaaataagcagcccaaccctggaattgagaacttt
ttagcatccttgaatatctccaaagaaaacgaagtacaggcatctcatcacaaagagcct
ccaagtgaagaacatttgtcaccacaatcatttgctatgaagggaacacggatgcttaaa
gaaattctaaaaattgatggcgctgagactgtggaccataagagtgaaatgaaacagttt
ggtaatgaagtcactgtttcttctaatagaagagatgagtatggaccttcctcacagcct
aagcaaaataagaaattagcatcttacatgaacaagtctcacagcgctaatgagtaccat
aatgttccgtctatggacaatgtgtgttggcccactgccagccagatgccttctgtgccc
acatcagtaaccgaactttctcgaatttgttcccttgttggaatgccacaaccagatttc
tcctttcttagaacaccacagacaatgacagtttgccaggtaaaattatctaatggttta
ctggtacatggaccacagtgtcactctgaaaatgaagccaaggagaaagctgcttttttt
gctttacaacaattgagttcattaggagtgaatttctctgtgcctctaccaatatttcca
aattatcctcctgctgtaccacctggaaccattcctccagtttttcctcagcctaccggc
tgggatcattatggaagcaacttagcatttggggcagccagtatgatgccttcatcatct
catctctttgcctcaacgccgtgggcaccgccagcgacagtacctggaaagcctttccat
catgcttcctatcccaggaccatgcccatggctgggggaattgcggctggtgtgcacagt
cagttcatacctctgcaggttactaaaaaacgagttgcaaataaaaagaactttgagaat
aaagaggctcagagttcttctcaagctgccccacgtcagacgagccagccagcgtcttca
gacattaccaaagtgatgccacaggagagttcatcagcttctgtaaagtcccctcacatt
actcagcctgtgtcttcttttcaagctgaagctgcctcccaaggccacagtatgtcttat
cataagtcaataccaagttcttcttcaagaagaaaaccaagaaaactggctgtcaatttt
ggtgtttctaaaccttctgaataa
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integrated database retrieval system
