Trichechus manatus latirostris (Florida manatee): 101354865
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Entry
101354865 CDS
T05135
Name
(RefSeq) collagen alpha-2(V) chain
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
tmu
Trichechus manatus latirostris (Florida manatee)
Pathway
tmu04820
Cytoskeleton in muscle cells
tmu04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
tmu00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
101354865
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
101354865
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tmu00536
]
101354865
Glycosaminoglycan binding proteins [BR:
tmu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101354865
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
TILa
Amnionless
Motif
Other DBs
NCBI-GeneID:
101354865
NCBI-ProteinID:
XP_004385648
UniProt:
A0A2Y9E3R8
LinkDB
All DBs
Position
Unknown
AA seq
1499 aa
AA seq
DB search
MMANWVEARPLLILTVLLGQFVSIKAQEEGEDESYDEEIACTQNGQMYLNRDIWKPAPCQ
ICVCDNGAILCDKIQCQDVLDCADPITPPGECCPVCPHTAGSSDTNFGRGKKGQKGEPGL
VPIVTGIRGRPGPAGPPGSQGPRGERGPKGRPGPRGPQGIDGEPGIPGQPGSPGPPGHPS
HPGPDGISRPFSAQMAGVDEKLGLGSQMGLMPGSVGPVGPRGPQGLQGQQGGVGPTGPPG
EPGDPGPMGPVGTRGPEGPSGKPGEDGEAGRNGNPGEVGFTGSPGARGFPGAPGLPGLKG
HRGHKGLEGPKGETGATGSKGEAGPTGPMGAMGPMGPRGMPGERGRIGPQGAPGQRGAHG
MPGKPGPMGPLGIPGSSGFPGNPGMKGEAGPTGARGPEGPQGQRGETGPPGPAGSQGLPG
AVGTDGTPGAKGPTGSPGTSGLPGLTGPPGSPGPQGSTGPPGIRGQPGDPGFPGFKGEAG
PKGEPGPHGIQGPIGPPGEEGKRGPRGDPGTVGPPGPVGERGAPGNRGFPGSDGLPGPKG
AQGERGPVGSSGPKGAQGDPGRPGEPGLPGARGLTGNPGVQGPEGKLGPLGAPGEDGRPG
PPGSIGIRGQPGSMGLPGPKGSSGDLGKPGEAGNAGVPGQRGAPGKDGEVGPSGPVGPPG
LAGERGEQGPPGPTGFQGLPGPPGPPGEGGKPGDQGVPGDPGAVGPLGPRGERGNPGERG
EPGITGLPGEKGMAGGHGPDGPKGSPGPTGTPGDTGPPGLQGMPGERGIAGTPGPKGDRG
GIGEKGAEGTAGNDGARGLPGPLGPPGPAGPTGEKGEPGPRGLVGPPGSRGNPGSRGENG
PTGAVGFAGPQGPDGQPGVKGEPGEPGQKGDAGSPGPQGLAGSPGPHGPNGVPGLKGGRG
TQGPPGATGFPGSAGRVGPPGPTGAPGPAGPLGEPGKEGPPGLRGDPGSHGRVGDRGPAG
PPGGPGDKGDPGEDGQPGPDGPPGPAGTTGQRGIVGMPGQRGERGMPGLPGPAGTPGKAG
PTGGPGDKGPPGPVGPPGSNGPVGEPGPEGPAGNDGTPGRDGAVGERGDRGDPGPAGLPG
SQGAPGTPGPVGAPGDAGQRGDPGSRGPVGPPGRAGKRGLPGPQGPRGDKGDNGDRGDRG
QKGHRGFTGLQGLPGPPGPNGEQGSAGIPGPFGPRGPPGPVGPSGKEGNPGPLGPIGPPG
VRGSVGEAGPEGPPGEPGPPGPPGPPGHLTAALGDIMGHYDESMPDPLPEFTEDQAAPDD
KNKTDPGVHATLKSLSSQIETMRSPDGSKKHPARTCDDLKLCHPTKQSGEYWIDPNQGSV
EDAIKVHCNMETGETCISANPSSVPRKTWWTSRSPDRKPVWYGLDMNRGSQFVYGDHQSP
NTAITQMTFLRLLSKEASQNITYICKNSVGHRDDQAKNLKKAVVLKGANDLEIKGEGNIR
FRYTVLQDTCSKRNADVGKTVFEYRTQNVARLPIIDLAPVDVGGTDQEFGIEIGPVCFV
NT seq
4500 nt
NT seq
+upstream
nt +downstream
nt
atgatggcaaactgggtggaagcaagacctctcctcattcttactgttttattagggcaa
tttgtctcaataaaagcccaggaagaaggcgaggatgagagttatgatgaagaaatagcc
tgcactcagaatggccagatgtacttaaacagagacatttggaaacctgccccttgccag
atatgtgtctgtgacaatggagctattctttgtgacaagatacagtgccaagatgttctc
gactgtgccgatcctatcactcctcctggggaatgctgtcctgtctgtccacatacagct
ggcagtagtgacaccaattttggtaggggaaaaaagggacaaaaaggagaaccaggatta
gtgcctattgtaacaggcatacgtggtcgtccgggaccagcggggcctccaggatcacaa
ggaccgagaggagagcgaggcccaaaaggaagacctggtccccgtggtcctcagggaatt
gatggagaaccaggtattcctggtcaacctggttctccagggcctcctggacatccatcc
cacccaggacctgatggcataagcaggccattttcagcccagatggctggggtggatgaa
aaacttggacttgggagtcaaatgggactgatgcctggctctgtgggtcctgttggccca
agaggaccacaaggtttacaagggcagcaaggtggtgttggccctacaggacctcctggt
gaacctggtgatcctggaccaatgggtccagttggtacacgtggaccagagggcccttct
gggaagcctggtgaagatggtgaagctggtagaaatggaaatcctggtgaagtgggattt
accggatctccaggagctcgaggctttcctggggctcctggtcttccaggcctgaagggt
caccgaggacataaaggtcttgaaggccctaaaggtgaaactggagcaactggttccaag
ggtgaagctggccctactggtccaatgggtgctatgggtcctatgggcccaagggggatg
ccaggagagcgagggcgaattgggccacagggtgctccaggacaacgaggtgcacatgga
atgcctggaaaacctggaccaatgggccctcttgggatacccggctcttctggttttcca
ggaaatcctggaatgaagggagaagcaggtcccactggggctcgaggcccagaaggtcct
cagggacagagaggtgaaactggaccaccaggcccagctggctctcaaggtcttcctggt
gcagtgggaactgatggtactcctggtgctaaaggtccaacgggctctccgggtacctct
ggtcttcctggcttgacggggcctcctggatctccaggacctcagggtagcactggacct
ccaggaattcgaggccaaccgggtgatccaggatttccaggttttaaaggagaagctgga
cccaagggggaaccgggaccacatggaattcaaggtccaatcggcccacctggtgaagaa
ggcaaaaggggtccccgaggtgatccaggaacagttggtcctccaggcccagtgggagaa
aggggtgctccgggcaatcgtggttttccaggctcagatggtttacctggaccaaagggg
gctcaaggagaaaggggtcctgtaggttcttcaggacccaaaggagctcagggggaccca
ggacgtccaggtgaacctgggctgccaggtgcccggggtctgacaggaaatcctggtgtt
caaggtcctgaaggaaaacttggacctttgggtgctccaggggaagatggccgtccaggt
cctccaggctccataggaatcagagggcagcctgggagtatgggtcttccaggccccaaa
ggtagcagtggtgaccttggaaaacctggagaagcaggaaatgctggtgttccagggcag
aggggagctcctggaaaagatggtgaagttggtccttctggtcctgtgggtccaccgggt
ctagctggggaaagaggagaacagggacctccaggccccactggctttcagggacttcct
ggtcctccagggcctcctggggaaggtggaaagccaggagatcagggtgttcctggagat
cccggagcagttggcccattaggacccagaggagaacgtggaaatcctggggaaagagga
gaaccaggaataacaggactacctggtgagaaaggaatggctggagggcatggtcctgat
ggtccaaaaggaagtccaggcccaactgggacccctggagatacaggcccgccaggtctt
caaggtatgcccggagaaagaggaattgcaggaactcctgggcccaagggtgacagaggg
ggcataggagagaaaggtgctgaaggcacagctggaaacgatggagcaagaggtcttcct
ggtcccttgggccctccgggtcctgctggtcccactggagaaaagggtgaacctggtcct
cgaggtttagttggtcctcctggctcccgtggcaatcctggttctcgtggtgaaaatggc
ccaacaggggctgttggttttgctggaccccagggtcctgatgggcagcctggtgtaaaa
ggtgagcctggagagccaggacagaagggagacgctggctctcctggaccacaaggtctg
gcaggatcccctggtcctcatggtcctaatggtgtacctggactaaagggtggccgagga
acccagggtccacctggcgctacaggatttcctggttctgctggtagagttggacctcca
ggacctactggagctccaggacctgcggggcccttaggggaacctgggaaggagggacct
ccaggtcttcgtggggaccccggttctcatgggcgagtgggagatcgaggaccagctgga
ccccctggtggcccaggagacaaaggggacccaggagaagatgggcagcctggtccagat
ggtccccctggtccagctggaactactgggcaaagaggaattgttggcatgcctggacaa
cgtggagagcgaggcatgcccggcctgccaggcccagcgggcacaccaggaaaagcagga
ccaactggcgggccaggagataaaggtccacctggacctgtgggacccccaggctcaaat
ggtcctgtaggggaacctggacctgaaggtcctgctggtaatgatggtactccgggacgg
gatggtgctgttggagaacgtggtgatcgtggagaccctgggcctgcaggtctgcctgga
tctcagggtgcccctggaacccccggccctgttggtgctccaggagatgcagggcaaaga
ggagatccgggttctcgaggtcctgtaggaccacctggtcgagctgggaaacgtggctta
cctggaccccaaggacctcgtggtgacaaaggcgataatggagatcgaggtgaccgaggt
cagaagggtcacagaggtttcactggtcttcagggtcttcctggacctcctggtccaaat
ggtgagcaaggcagtgctggaattcctggaccctttggcccaagaggtcctccaggccca
gttggcccttcagggaaagaaggaaaccctgggccacttgggccaattggacctcctggt
gtgcgtggcagtgtaggagaggcaggacctgagggtcctcctggtgagcccggacctcct
ggccctccaggtcctcctggacaccttacagctgctcttggggatattatggggcactat
gatgagagcatgccagatccacttccggagttcactgaagatcaagcagccccagatgac
aaaaacaaaacagacccaggggtccatgctaccctgaagtcactcagtagtcagattgaa
accatgcgtagtcctgatggctctaaaaagcatccagcccggacctgtgatgacttaaag
ctttgccatcccacaaagcaaagtggtgaatactggattgatcctaaccagggaagtgtt
gaagatgcaatcaaagttcactgcaacatggaaacaggagaaacatgtatttcagcaaac
ccatccagtgtaccacgtaaaacctggtggaccagcagatctcctgaccggaagcctgtt
tggtatggtcttgatatgaatagaggatctcagtttgtttatggagaccaccagtcacct
aatacagccattactcaaatgaccttcttacgccttttgtcaaaagaagcctcgcagaac
attacatacatctgtaaaaacagtgtaggccacagggatgatcaagcaaagaacctcaag
aaagctgtggtactcaaaggggctaatgacttagaaatcaaaggagagggaaacattaga
ttcagatatacagttctccaagacacttgctctaaacgaaatgcagatgtgggcaagact
gtctttgaatatagaacacagaatgtggcacgcttgcccattatagatcttgcccctgtg
gatgttggcggcacagatcaggaatttggcatcgaaattgggccagtttgttttgtgtaa
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