Thauera aminoaromatica: Tmz1t_3623
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Entry
Tmz1t_3623 CDS
T00804
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
tmz
Thauera aminoaromatica
Pathway
tmz03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
tmz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Tmz1t_3623
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tmz03400
]
Tmz1t_3623
Enzymes [BR:
tmz01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Tmz1t_3623
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Tmz1t_3623
DNA repair and recombination proteins [BR:
tmz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Tmz1t_3623
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
ACR02216
UniProt:
C4KBP1
LinkDB
All DBs
Position
complement(3980152..3980970)
Genome browser
AA seq
272 aa
AA seq
DB search
MPELPEVETTCRGIRPHVQGRSLSRLVVRNPRLRVAVPADLPAHIEGARLEAVDRRAKYL
LLRFPAGTVIVHLGMSGSLRVVAAAEPAGAHDHVDFVFGECALRLRDPRRFGMVVWQPGD
VAAHPLLAGLGPEPLGDGFDADWLLRITRGLRAPIKHVLMDSRKLVGVGNIYASESLFRA
RIHPLEPAGRLGPRRCARLVDCVRETLAAAIAAGGSTLRDFVGGDGRPGYFQQQYFVYGR
DGESCRVCGTPVRRIVSAQRASFFCPRCQRRS
NT seq
819 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaactgcccgaagtcgagaccacctgccgtggaatccggccgcacgtccagggc
cgcagcctgagccggctggtggtgcgcaatccgcgcctgcgcgtggcggtgcccgccgac
ctgcccgcgcacatcgagggcgccaggctcgaggcggtcgaccggcgtgccaagtacctg
ctgctgcgttttcccgcgggcacggtgatcgtgcatctcgggatgtcgggcagcctgcgc
gtggtcgcggcggccgagccggcgggcgcgcacgaccacgtcgattttgtcttcggcgag
tgcgcgctgcgtctgcgcgacccacgccgcttcggcatggtggtgtggcagcccggcgac
gtggcggcgcatccgctgctcgccggcctggggccggaaccgctcggcgacggcttcgac
gccgactggctgctgcgcatcacgcgcggtctgcgcgcgccgatcaagcatgtgctgatg
gacagccgcaagctcgtcggcgtgggcaacatctacgcctccgagagcctcttccgcgcc
cgcatccatccgctcgagcccgccggccggctcgggccgcgacgctgcgcgcgcctggtc
gattgtgtgcgcgagacgctcgccgccgcgatcgcggccggcggcagcacgctgcgcgac
tttgtcggcggcgacggccggccaggctatttccagcagcagtacttcgtctatggtcgc
gacggggagtcctgccgggtgtgcggcacgccggtgcggcgcatcgtcagcgcccaacgc
gcgagcttcttctgtccgcgctgccagcgccgcagctga
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