Tetraodon nigroviridis (spotted green pufferfish): GSTEN00019215G001
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Entry
GSTEN00019215G001 CDS
T04346
Name
(GenBank) unnamed protein product
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
tng
Tetraodon nigroviridis (spotted green pufferfish)
Pathway
tng03020
RNA polymerase
tng03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tng00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GSTEN00019215G001
09124 Replication and repair
03420 Nucleotide excision repair
GSTEN00019215G001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tng03021
]
GSTEN00019215G001
03400 DNA repair and recombination proteins [BR:
tng03400
]
GSTEN00019215G001
Enzymes [BR:
tng01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GSTEN00019215G001
Transcription machinery [BR:
tng03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
GSTEN00019215G001
DNA repair and recombination proteins [BR:
tng03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
GSTEN00019215G001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_1
RNA_pol_Rpb1_6
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_7
Motif
Other DBs
NCBI-ProteinID:
CAG00699
UniProt:
Q4SF83
LinkDB
All DBs
Position
undetermined
AA seq
1745 aa
AA seq
DB search
GHGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDMILGMD
PKFARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAA
AHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRV
DFSARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYI
IRDNGDRIDLRFHPKPSDLHLQIGYKASSKALHMCDGDIVIFNRQPTLHKMSMMGHRVRI
LPWSTFRLNLRYRLKQGRADAKAQGKPLIEFPVCRINALAQSSRYCMYFPDFCFSVTTPY
NADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRD
VFLDRGEVMNLLMFLSTWDGKMPQPAILKPRALWTGKQIFSLIIPGHINVIRTHSTHPDD
EDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNI
QTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNT
LRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINISQVIAVVGQQN
VEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAV
KTAETGKFVCRRYIQRRLIKSMESVMVKYDGTVRNSINQVVQLRYGEDGLAGENVEFQNL
ATLKPSHRAFEKKFKFDCTNERALRRTLQEDVVKDVMTNAHVQSSLEREFEKMKEDREIL
RAIFPTGDSKVVLPCNLARMIWNAQKIFRINTRTPTDLSPLRVVEGILSSVSLNEICCSP
PFTLNISIADIQFEHVFGLSGTHELSKKLVIVNGDDPLSRQAQQNATLLFNIHLRSTLCS
KRMTEEFRLSTEAFDWLLGEIETKFNQSIAHPGEMVGALAAQSLGEPATQMTLNTFHYAG
VSAKNVTLGVPRLKELINISKRPKTPSLTVFLLGQAARDAERAKDILCRLEHTTLRKVTA
NTAIYYDPNPQNTVVEEDQEWVNVYYEMPDFDVTRISPWLLRIELDRKHMTDSQTDHGAD
CREDQCRIMNSDEYKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQ
TDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVIQSLS
CLIGLRELFDGDRVPSSGFQVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTC
RGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEASSHGECDPMKGVSENIMLGQLAPAG
TGCFDLLLDAEKCKYGMEIPTNIPGISVAGSTGMFFGSAPSPMSGMSPAMTPWNTGATPA
YGAWSPSVGECLPRSFFLCFILKFQVLSGTFFSPPSRKRNDTGGGGLLSQRSIRCKWLLS
GLFPGLVAHTWLSWFSRAGQPLHPISRWSYVTQLLAYFSSLRASFPWRLHPSEPWLLPNI
PFLLSHFSLLLPHQPQLQSHFPLLFANLPPVTLQPPPPTRPRLHPTLPHLLPTLLRPPLT
PQPHPLILPPRQATARHHPVTAQRHPATRPLHLPRPPLLHRRAPHLPRTPPPPLRTLPPL
LPTLPPVQATALHPQTTPHLTILKVPLTAPRHLGTAPPPPPTARPSAPTTAMRRTDVRRA
RRGGS
NT seq
5238 nt
NT seq
+upstream
nt +downstream
nt
ggccacggaggttgcgggcgctatcagccccgtattagacgctctggcttggaactctat
gcagagtggaagcatgttaacgaggattctcaagagaaaaaaatcctgttaagcccagag
cgagtgcacgagatcttcaaacgcatttctgatgaagaggacatgattttgggcatggac
ccaaagtttgcccggccggaatggatgattgtaactgtgctacctgtgcctcctctggct
gtcaggccagccgtggtcatgcaaggctctgcacgtaaccaggatgacctgactcacaag
cttgctgacatcgtaaaaatcaacaaccagctgaggcgaaatgagcagagtggagctgca
gctcacgtcatcgctgaggacgtcaaactgcttcagtttcatgtggccactatggtggac
aacgaactgccaggcctgcccagggcaatgcaaaagtctggccgtcctctaaaatccata
aaacagcgccttaaagggaaggaaggcagagtccgaggtaacctcatgggcaagcgtgtg
gacttctcggccagaacggtcatcaccccagaccccaacctgcaaatcgaccaagtgggc
gtaccacgatccatcgcagccaatatgacatttccagaaatcgtcacgccttttaacatt
gacaggctacaagagctggtgcgaagaggtaacagccagtaccctggagccaagtacatc
attcgcgacaacggagacagaatcgacctgcgatttcaccccaaaccaagtgaccttcac
ctccagattggttacaaggcaagctctaaagctttacacatgtgcgatggcgacatcgtc
atcttcaaccggcaacccacactacataaaatgtcaatgatgggacacagggtcaggatc
ctcccatggtccacatttcgactcaatctcaggtacagacttaaacagggacgcgccgat
gctaaagcacagggcaaacctttgatagaattcccggtgtgtcgtattaatgcattagct
cagagctcacggtattgtatgtattttcctgatttctgcttcagtgtgacaaccccatac
aacgctgactttgacggagatgagatgaacctccacttgccccagtctctggaaacacgg
gcagagatccaggagctggccatggtgccacgtatgatcgtaacaccgcagtccaacagg
cctgtcatgggtattgtgcaggacactctcacagctgtccgcaaattcaccaagagagac
gtctttttagacagaggtgaagtgatgaatctcctgatgttcctgtctacgtgggatgga
aaaatgcctcagccagcaatcctcaagccccgtgcactgtggaccggcaagcagatcttc
agcctaatcattcctggacacattaatgtgatccgcacacacagcacacatcctgatgat
gaagacagcggtccgtacaaacacatctcacccggtgacaccaaggtcatagtggagaat
ggggagctgatcatgggtatcctatgcaagaaatccttgggaacctcggctggctccctc
gtccacatctcctacctggagatgggccacgacattacccggctcttctattcaaacatc
cagaccgtggtcaacaactggctgctcatcgagggtcattccattggtatcggtgattcc
attgctgatgctaagacctacctcgacatccagaacaccatcaagaaagccaaacaagat
gtgatagaagtcatcgagaaagcccacaacaatgagctggagcccactcctggtaacacg
ctgaggcagacctttgagaaccaggtgaatcgcatcctcaacgacgctcgagacaaaacg
gggtcgtcagcgcagaagtctctctccgagtacaacaacttcaagtccatggtggtggcc
ggatctaaaggatcaaagattaacatctcacaggtcattgctgtggtggggcagcagaac
gtggagggtaaacgaatccccttcggattcaagcaccgcacgctgccgcacttcatcaaa
gacgactacggtcctgagagcagaggctttgtggagaactcctatttggctggcctgaca
cctacagagttcttcttccatgccatgggagggagagagggtctgatcgacacagctgta
aagactgctgaaacaggcaagtttgtgtgtagacgttacatccagcgtcgtctgatcaaa
tctatggagtcggtaatggtgaagtacgacggcacagtgcgtaactccatcaaccaggtt
gttcagctgcgttatggtgaagacggcctggctggagagaatgtggagttccaaaacttg
gccacactcaaaccctcacacagggcttttgagaagaagtttaagtttgactgcaccaac
gagcgggcactgaggcgaacgctgcaggaagatgtcgtaaaggatgtgatgacaaacgcg
catgtgcagagctccctggagagagagtttgagaagatgaaggaggacagggaaattctg
cgggcgattttccccacaggggacagtaaggtggtgctgccgtgtaatctggccagaatg
atctggaatgctcagaagatcttccgcattaacaccagaacccctacggacctcagccct
ctcagggtggttgaaggtatcctcagctctgtctcattaaatgaaatctgttgttcccca
cccttcactttgaatatttcaattgcagacattcaattcgagcatgtgtttggactttca
ggtactcacgagctcagtaagaagctggtcattgtgaacggcgatgacccgctgagcaga
caagctcagcagaacgccactctgctcttcaacatccacctgcgctccaccctctgctcc
aaacgcatgacagaagagttccgcctgtccaccgaggcctttgactggctgctgggagag
attgagaccaagttcaaccagtccattgcccatccaggtgaaatggttggtgctctggct
gctcagtccctgggagagccggccacccagatgacactgaacactttccactacgccggt
gtgtcggccaaaaacgtaacactgggcgtgcctcgtctgaaggagctgatcaacatctcc
aagaggcccaaaaccccctcgctgaccgttttcctgctgggtcaggcagcacgtgacgca
gagagagccaaagacatcctgtgtcgactggaacatacaaccttacgaaaggtgacggcc
aacactgccatctactatgacccgaacccccagaacaccgtggtggaggaggatcaggag
tgggtcaacgtctactatgaaatgcccgactttgacgtcacccgcatttcaccgtggctg
ctgcgcatcgagcttgaccgcaagcacatgacagactcgcaaactgaccatggagcagat
tgcagagaagatcaatgcagaatcatgaacagcgatgagtacaagttccaagaggatgag
gaagtggtagacaaaatggatgatgacgtctttttgagatgcatcgagtcgaacatgctg
acagacatgactctacaaggcattgagcagatcagcaaggtgtacatgcacttgccccaa
actgacaacaagaaaaagatcatcatcacagaggacggtgagttcaaggccctgcaggag
tggatcctcgagacagacggcgtgagcctgatgagggttctcagcgagaaggacgtagat
cccgtcaggaccacctccaacgacattgtggagatcttcacggtaatacaaagtctcagt
tgtttgataggattacgggagctttttgatggcgatcgtgtcccctcgtctggtttccag
gtgctgggcattgaggcggtgagaaaggctctagagagggagctgtaccacgtcatctcc
ttcgacggctcctatgtcaactaccgtcacttggctctgctttgcgacacgatgacgtgt
cggggccacttgatggctatcacgcgccacggcatcaaccgtcaagacacgggaccgctc
atgaagtgctcctttgaggagacggtggacgtgttgatggaggcatcttcccatggcgag
tgcgatccaatgaaaggcgtgtcggagaacatcatgctaggccagctcgccccagccggc
accggatgctttgacctgctgttggatgccgagaagtgtaaatacggcatggagattccc
acaaacatacctggcatcagtgtggctggatccaccggcatgttcttcggttcggcgccc
agccccatgagtggaatgtcgcctgccatgacaccctggaacacaggcgctacgccagcc
tacggggcctggtcccccagtgttggtgagtgcctgcccaggtctttttttttgtgcttt
atattaaagtttcaggtgctgagtggtacctttttttcccctccatccaggaagcggaat
gacaccgggggcggcgggcttctctcccagcgcagcatccgatgcaagtggcttctctcc
gggttattccccggcctggtcgcccacacctggctctcctggttctccagggccggccag
cccctacatcccatctccaggtggagctatgtcacccaactactcgcctacttctccagc
ctacgagcctcgttcccctggaggctacacccctcagagccctggctactccccaacatc
cccttcctactctcccacttctccctcctactcccccaccagccccaactacagtcccac
ttccccctcctattcgccaacctccccccagttactctccaacctccccctcctactcgc
ccacgtctccatcctactctcccacatctccttcctactctcctacgtccccctcttact
ccccaacctcaccctcttattctcccacctcgccaagctacagcccgacatcacccagtt
acagcccaacgtcacccagctactcgcccacttcaccttcctaggcccccacttctccat
cgtagggccccacatctccctcgtactcccccacctccccttcgtactctcccacctctc
cttcctactctcccaccagtccaagctacagccctacatccccaaactacaccccacctc
accatcctaaaggttccacttacagccccacgtcacctgggtacagccccacctccccca
cctacagcccggccatcagccccgacgacagcgatgaggagaactgatgtgcgtcgggcg
aggaggggcgggagctga
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integrated database retrieval system