KEGG   Thermofilum pendens: Tpen_0750Help
Entry
Tpen_0750         CDS       T00446                                 

Definition
(GenBank) DNA ligase I, ATP-dependent Dnl1
  KO
K10747  
DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
tpe  Thermofilum pendens
Pathway
DNA replication
Base excision repair
Nucleotide excision repair
Mismatch repair
Brite
KEGG Orthology (KO) [BR:tpe00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    Tpen_0750
   03410 Base excision repair
    Tpen_0750
   03420 Nucleotide excision repair
    Tpen_0750
   03430 Mismatch repair
    Tpen_0750
Enzymes [BR:tpe01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Tpen_0750
    6.5.1.6  DNA ligase (ATP or NAD+)
     Tpen_0750
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     Tpen_0750
DNA replication proteins [BR:tpe03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    Tpen_0750
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     Tpen_0750
DNA repair and recombination proteins [BR:tpe03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     Tpen_0750
   NER (nucleotide excision repair)
    Other NER factors
     Tpen_0750
   MMR (mismatch exicision repair)
    Other MMR factors
     Tpen_0750
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
JGI: 
UniProt: 
LinkDB All DBs
Position
701123..702928
Genome map
AA seq 601 aa AA seqDB search
MGAAGDLPYSVLADFYERIESTSSRLAMTDYLVALFKKTPPEVIDKVVYLTQGQLRPDYE
GVELGVAEKLALRALAKASGRHLKDVEDLYKKTGDIGAVAEKLLTAPGGGLLEFFGTPVQ
KKELTVSQVYSALMKIAQASGEGAQETKVNTLVALLQDAKPKEARYILRTVLGRLRLGIA
DMTILDALAAAFAGSKAARDVIERAYTKHPDLGYIAKLLATKGLDAVASLKIEVGIPVLP
MLAERLSDPAEILEKLGGKCLAEYKYDGERVQAHKSGDKVLLFSRRLENITHHYPDVVEY
VKRLKVREAIVEGEIVAYNPDTGEMLPFQELMHRRRKYDVEKAMKEYPVRVYLFDVIYMD
GEELIEKPLDQRRLILEKIVPEGDEDILLSTAKVVGDAKDLLHFFEQAISEGCEGVMCKS
IGPGSIYQMGARGWLWIKFKRDYRMEMTDTVDLVVVGGFHGRGKRAGTYGALLMAAYDPE
TDTFKTVCKVGTGFTDEDLAKLPELLDPYKIPHRHPRVFSKIEADVWFVPAVVLEIIGAE
ITLSPLHTCALNKLEEGAGLAIRFPRFTGRYRFDKKPEQATTESELIEMYKSQKKTALQQ
S
NT seq 1806 nt NT seq  +upstreamnt  +downstreamnt
atgggcgcggcgggagaccttccctactcggtcttagcggatttctacgagaggatagag
tccacgtctagccgcctggcgatgacagactacctggtggcgctcttcaagaagaccccg
cccgaggtaatagacaaggttgtatatctgactcagggccagctgaggcccgactacgag
ggcgtcgagctgggggtcgctgagaagctcgccctgagggctctcgctaaggcttcgggc
aggcacctgaaggacgtggaggatctatacaagaagacgggcgacataggagcggtggcc
gagaagcttctcaccgccccgggcggcgggcttctggagttcttcgggacccctgtccag
aagaaggagctgacggtctctcaggtgtacagcgcgctcatgaagatagcccaggcgtcc
ggtgagggcgcccaggagaccaaggtcaacacgctcgtagccttgcttcaggacgctaag
ccgaaggaagcccgctacatcctgaggactgtgcttgggaggctccgcctcggcatagcc
gacatgacgatactcgacgcgctcgcagcggctttcgcgggctctaaggctgcgagggac
gtaatcgagagggcttacacgaagcacccggacctcggctacatcgcgaagttgctggcc
acgaagggcctcgacgccgtggcgtcgctgaagatagaggtggggatcccggttctccca
atgctggccgagaggctgagcgaccccgcggagatactcgagaagctgggcgggaagtgc
ctcgcggagtacaagtacgacggggagagggttcaggctcacaagagcggggacaaggtc
ctgctgttcagcaggaggctggagaacatcacccaccactacccggacgtcgtggagtac
gtgaagaggctgaaggtgcgcgaggcgatagtggagggggagatagtcgcctacaacccg
gacaccggagagatgctcccattccaggagctcatgcacaggaggcgtaagtacgacgtg
gagaaagcgatgaaggagtacccggtgagggtctacctcttcgacgtgatatacatggac
ggcgaggagctgatcgagaagccgctggaccagaggaggctcatcctcgagaagatagtc
ccggagggcgacgaggacatcctgctgagcacggcgaaggtcgtcggcgacgcgaaggac
ctgctacacttcttcgagcaggcgataagcgagggctgcgagggggttatgtgcaagtcg
ataggccccggcagcatataccagatgggcgccaggggctggctgtggataaagttcaag
agggactacaggatggagatgaccgacaccgtcgacctcgtcgtggtgggcggcttccac
ggcaggggcaagcgtgcgggcacatacggcgcgctcctcatggccgcctatgacccggag
acggataccttcaagaccgtctgcaaggtaggcaccggcttcacggacgaggatctcgcg
aagctcccggagctcctcgacccctacaagataccgcacaggcaccccagggttttctcc
aagatagaggcggacgtctggttcgtgccggcggtcgtgctcgaaatcataggcgccgag
atcacgctcagcccgctccacacgtgtgctctcaacaagctggaggagggcgcggggctg
gctatacgcttcccgaggttcactgggaggtataggttcgacaagaagccggagcaggca
accactgagagcgagctcatcgagatgtacaagtctcagaagaagaccgccctgcagcag
tcctaa

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