Thalassiosira pseudonana: THAPSDRAFT_21268
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Entry
THAPSDRAFT_21268 CDS
T01078
Name
(RefSeq) predicted protein
Organism
tps
Thalassiosira pseudonana
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CXXC
PHD
Atx10homo_assoc
V-ATPase_H_C
V-ATPase_H_N
Arm
Motif
Other DBs
NCBI-GeneID:
7444622
NCBI-ProteinID:
XP_002287811
JGI:
21268
UniProt:
B8BUB0
LinkDB
All DBs
Position
2:complement(943302..948526)
Genome browser
AA seq
1562 aa
AA seq
DB search
MSADSNANYDASDNDVVSNGEEDMKPAATTGNDDDYDDEVDAYAKTNNKGSDEDRTSSYE
VSDADDVNSGSSSSSDEDDNTPSDGLSSYERLRLERIKRNQERLASLGFAEDKPTLAATK
KKATPKSKRAAMEMGPRRQLPGRAGRANFTDLRQESLDRKERKEKKPKKEKVVKVKKNQD
ACWTCQSETGEMMSCDYCRKLYHPTTCHPPLPPNSKEFRCTECQNNPKRTKRVACGHCSA
CKRDEDCMTCVVCVQKMEVEETGEGSMKRSKCIFRKCQSWGTGILERDDGEGDDDEEVED
NHDANCYTCEEGGDLICCDNCPRVFHSNCHIPKIYSLPEGEWFCMLCPKKKAPSKEKKPT
SKYARLLAAEIDGREIAVTVKFPPVPCVTCKESEVLGGMIPTDWVTCRSCSNFCHLKCVT
PAMDEKPAKWRCPPCIERRLNKTNTPIEKKEKMSHYARQMQLQPVFDGEHDNDCYICFIG
GDLICCDYCEKAFHMRCHIPPLVNVPAGLWKCCECSASDYSKMFKCGECEACVRDDCGEC
NPCLDKVKFGGAGRRKKACLKKQCPFKRLAPPASKIASTTTEEELQLQFKKALDARSADR
KQRRTRLEASVSPNVNGNNTTNGNGMTGEKASNGDISSSKKKRKRAEDINISDRKAALIA
SWGASESTSAVTASGETPSRKANDKSTKKITTTDTSPNATESKAKKRAPPPKRVDLNDNT
SNTIKAIVKRAADELDNENVQVEACQYLRIFVTSVENVEKIAQLGGLKMIALAMIEHTND
ARIQIETITTLSELVYTNQAFSSPMFQHGCTSLVLEAMRNHESQLQVQHAGCGFFRALSY
KFINHITVNSVCGVEAVIQSMKYNSKFCEVLKDGCLFLQNMLCNPAVSTETTNAIISHNL
VDFIIDGMVSFTEPDYLAAACGILARIAVDEDARAAIIADDNVAIRALVSVLLSNIDAIA
CASCLTALNLLADDSATEIVQCGGIQNIISYVTTRTDSLEMLVSAFRLLVKLSTAEGSSQ
IFKEAGGFDMIKAGMNKHRHVPFIKERGCALLRKLEISNEDEATAAVTMIVAAINCDKED
DMVQFEGGHALLQLCSTFPDLMSQLQSVKLSNAIFRETPVATDDINPVVMDPYSSSVDIA
EEEEEAMYKPNRHEDPVGSKIKAIISKANRNLSESKIQDLACEKLRGLSVDEENVDKIVL
LGGLRMVAAAMKEHPEKTIVQAEASALLAEMMWKYPECSGSIIRKGLLQLVVESVERHVG
NMKVQQMGCGFFRALSYENESHPAISRARGLEMIIGSMKRNAKKCEVMKECCIFLQNVLF
NPRVSPETPAYLVASGIISIIVNGMTTFSDSAYLETACGVLTNLAINEKARSVIGEDEKC
IPTIFSILESSKIEAETTKAALTTLKLLATNNTANASRIVQQGGVEKSILLFTKHPKDGD
ISSMIIQFLAELTKNNEVANSLVEAGGFELIINEMCKHENNPSVQEAGCQALCNLPTNDV
AKADAAVRLILTAMNTHYYDGKVQAGGVRALIHFCAECTSLASTLRSDENAEILRQSEIR
FD
NT seq
4689 nt
NT seq
+upstream
nt +downstream
nt
atgtctgccgacagcaacgcaaattacgatgcatctgataatgatgttgtctctaatgga
gaggaagacatgaaacctgctgctacgactggcaacgacgacgactacgacgatgaagtt
gatgcatacgccaaaacaaacaataaaggaagcgacgaggacagaacctcctcctatgaa
gtgagtgacgccgacgatgtcaactccggcagcagcagctcctcagacgaagacgacaac
acccccagcgatggcctctcatcctacgaacgccttcgtctcgaacgcatcaaacgaaat
caagaacggctagcctccctcggtttcgccgaggataaaccaaccctagcagctactaaa
aagaaggctacgcccaaatcaaaaagggcagcgatggagatgggtccgaggcgtcaactt
cccggacgagccgggcgggctaattttacagatttgaggcaagagagtttggataggaag
gagaggaaggaaaagaaaccaaagaaggaaaaggttgtgaaagtgaagaagaatcaggat
gcatgttggacttgtcagagtgagactggtgaaatgatgagctgcgactactgccgcaaa
ctctaccacccaacaacctgccatcccccactcccacccaactccaaagaattccgatgc
accgagtgtcaaaacaatcccaaacgtacaaaacgagtcgcctgtggtcattgctcagca
tgcaaacgcgatgaagactgcatgacgtgtgtggtatgtgtgcaaaagatggaggtggag
gagacgggggaggggagtatgaagagatccaagtgcatttttagaaagtgtcagagctgg
ggtacaggtatcttggagagggatgatggagagggggatgacgacgaagaggtggaagat
aatcatgatgccaattgctatacctgtgaagagggaggtgacttgatctgctgtgacaac
tgcccccgagtattccattccaattgccacatacccaaaatatattccttgccagaagga
gaatggttttgcatgctttgtccgaagaagaaggctccttcaaaggaaaagaaaccaacg
tcaaagtatgctcgtctgctcgctgcagagattgatggacgggagattgctgttacggta
aagtttcctcctgttccttgtgttacttgtaaggagtcagaagtgcttggtggaatgatc
cccaccgactgggttacctgtcgatcatgcagcaacttttgccacttgaaatgtgttacg
cctgcgatggatgagaagccagcaaaatggaggtgtccaccgtgcattgaacgacgattg
aacaagacaaataccccaatagagaagaaagagaagatgtcccactatgctaggcaaatg
caactacaacctgtgtttgacggtgaacacgacaatgactgctacatctgtttcattgga
ggagatttgatatgctgtgactactgcgagaaggcgtttcacatgcggtgtcatatccct
ccgctcgtgaatgtacccgctgggctgtggaagtgttgcgagtgctcggcatctgactac
tcaaaaatgttcaagtgtggagagtgtgaggcatgcgttcgagacgattgtggagagtgc
aacccgtgtttggacaaggtgaagtttggaggagctggtcgtagaaaaaaggcatgcctg
aagaagcaatgcccattcaaacggcttgctcctcccgcatctaaaattgcgagcacgacg
acagaggaggaactgcagttgcaattcaaaaaggcacttgatgctcgatctgctgataga
aaacaaaggaggactcggttggaagcttcagtttcacctaatgtgaatgggaataataca
accaatggaaatggtatgaccggagagaaggcttcgaatggagacatttcttcatcaaag
aaaaagaggaaaagagctgaggatataaatatatctgatcgaaaggctgctctcattgcg
tcgtggggggcgtcagagtcaacatcggcagtaacagcatcgggggagactccttcaagg
aaagcaaatgacaaatcaacgaagaagataacaacgacggatacttctccaaacgcaaca
gagagcaaagcgaaaaagagagctcctccacccaagagagtcgatttaaacgataatacg
agcaacacaatcaaagccatcgtgaaacgagccgcagacgaactcgacaatgaaaatgtc
caggtagaggcctgtcagtatcttaggatatttgtaaccagcgttgagaatgtggagaaa
atagctcagttaggaggtctgaaaatgattgcattggcaatgatagagcacaccaacgat
gcgaggattcagattgagacaataacaaccctgtcagagcttgtttacacaaatcaagcg
ttcagtagtccaatgtttcagcatggatgtacatcgcttgtgctcgaggcaatgaggaac
catgagtctcagctgcaagtgcagcatgctggatgtggtttcttccgggctttatcttac
aagttcatcaatcatattacagtgaacagtgtttgtggagtggaagctgtcattcagtct
atgaagtacaactcgaaattctgtgaggtattgaaagatggctgtcttttcttgcaaaac
atgctctgtaatcctgctgtatcgaccgagacaaccaacgctattatcagtcacaacctg
gtcgatttcattattgatgggatggtatcgtttactgaacccgattaccttgctgctgca
tgtgggattttagctcgtattgcggtagatgaagacgcacgggctgccatcattgcagac
gacaatgtggcgattcgggcgttagtgtcggtgttgttatctaacatcgacgccattgct
tgtgcaagttgtctcactgccctcaatcttcttgccgacgacagtgcaactgaaatcgtt
caatgtggagggatacagaatataattagctacgtgacaactcgcactgacagcttagaa
atgttggtatcggcgtttaggctactagtcaagttaagtacggccgaaggcagctctcag
atattcaaggaagcgggaggtttcgatatgatcaaagctggaatgaacaagcatcgtcac
gtgccatttattaaagaaagaggatgtgccctattgcggaagcttgaaatctccaacgaa
gacgaagcaactgcagcagttactatgattgtagccgcgataaactgtgacaaagaagac
gacatggttcagtttgagggtgggcatgccttgttgcagctttgctcgacattccctgac
ttgatgtcgcaactacaatcagtgaaattgagcaatgccatctttcgcgagactccagtt
gccactgacgacatcaatcccgtagtcatggatccttatagctcatctgttgatattgca
gaggaggaagaagaagcaatgtataaacccaaccgacacgaggatcctgtgggtagcaag
atcaaagcaatcattagcaaagccaataggaatctttccgaatctaagatccaggatctt
gcttgtgagaagttgagaggtctttcggtggacgaggaaaacgtagataagattgtgctg
ctaggaggtctaaggatggttgcggccgcaatgaaggagcaccccgaaaaaacaattgtg
caggcggaagccagtgcgttgttggcagaaatgatgtggaagtatccagagtgcagtggg
tcaatcattcggaaaggattactacagttggtagtggaatcagttgaacggcacgttggc
aatatgaaggtgcaacagatgggttgtggattctttcgtgctctctcgtatgagaacgaa
agccaccccgctatatctcgcgccagaggtctcgaaatgatcattggtagcatgaaaaga
aatgccaagaagtgtgaagtgatgaaggaatgctgcatcttcttgcaaaatgtcttattc
aatcctcgcgtatcgcccgagactccagcgtacctagttgccagtggtatcatttctatt
attgtcaatggcatgacgacattctccgactcagcttatcttgagactgcttgtggtgtt
ctcaccaaccttgcaatcaacgagaaggcacgatctgtcattggagaagacgagaaatgt
attccgacgatcttctcgatattggagtcgtcgaagattgaggccgaaacgacaaaggcg
gcacttacaactctgaaattactcgcgacaaacaacactgcgaatgcgtctcggattgtg
caacaaggaggagtggagaagtccattctactctttacaaagcacccaaaagatggggac
atatcatcaatgatcattcaatttctcgcagagctgacgaagaataatgaagttgccaat
tcacttgtggaagcagggggcttcgaattgattattaatgagatgtgcaaacacgaaaac
aacccttcagtacaagaagcggggtgccaagccctttgcaatctcccaaccaatgacgtc
gcgaaggccgatgccgcagttcgtttgatattaactgcgatgaacacccactactacgac
ggaaaggtacaggctggaggggttcgggctttaatccacttctgcgctgaatgcacgtcc
ttggcttcgactcttcgttctgacgagaatgctgaaatacttcgtcaatcggaaattcgt
tttgattag
DBGET
integrated database retrieval system
