Takifugu rubripes (torafugu): 101078349
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Entry
101078349 CDS
T02386
Symbol
snrnp200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
3.6.4.13
]
Organism
tru
Takifugu rubripes (torafugu)
Pathway
tru03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tru00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101078349 (snrnp200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tru03041
]
101078349 (snrnp200)
Enzymes [BR:
tru01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.4 Acting on acid anhydrides to facilitate cellular and subcellular movement
3.6.4.13 RNA helicase
101078349 (snrnp200)
Spliceosome [BR:
tru03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
101078349 (snrnp200)
Complex C
U5 SnRNP specific factors
101078349 (snrnp200)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
SWI2_SNF2
PhoH
DUF603
Motif
Other DBs
NCBI-GeneID:
101078349
NCBI-ProteinID:
XP_003977446
Ensembl:
ENSTRUG00000001307
UniProt:
H2RSA0
LinkDB
All DBs
Position
21:1805309..1816399
Genome browser
AA seq
2136 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGSKMGDKAQRTK
PQKLEERRDKRRKRDEDRHDINKMKGFTLLSEGIDDMVGIVYKPKTKETRETYEVLLSFI
HAALGDQPRDILCGAADEVLAVLKNDKMRDKERRREVEQLLGPADDTRYHVLVNLGKKIT
DYGGDKDLQNMDDNIDETYGVNVQFESDEEEGDEDLFGEVRDKHSDEDSEGEEANVGCTL
TANLGVTGDVMTVKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTTSDDR
ECENQLVLLLGFNNFDFIKILRQHRRMIQYCTMLASAQSEAEKERITGKMESDPELSKIL
YQLQETEKEDIIREERSRRERVRKSRVDDLESMDMDHGEAVAPRQLLDLDDLAFTQGSHF
MANKRCQLPDGSFRKQRKGYEEVHVPALKAKPFAENEVLVGIDKLPKYAQAAFEGFKTLN
RIQSKLFKTTMETDENLLICAPTGAGKTNVALMAMLREIGKHINMDGTINIDDFKIIYIA
PMRSLVQEMVGSFSKRLASYGITVSELTGDHQLCKEEINATQIIVCTPEKWDIITRKGGE
RTYTQLVRLIIIDEIHLLHDDRGPVLESLVARTIRNVELTQEDVRLLGLSATLPNYEDVA
TCLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVL
VFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGF
AIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWT
ELGALDILQMLGRAGRPQYDTKGEGILITSHAELQYYLSLLNQQLPIESQMVSKLPDMLN
AEVVLGNVQNAKDAVNWLGYTYLYVRMLRNPTLYAVSHDDRSSDPLLERRRLDLVHTASS
VLDKNNLIKYDKRTGSFQVTDLGRIASHFYVTHDSIQTYNQLLKPTLSEIELFRVFSLSS
EFRNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAYISQLKLEGFALMADMV
YVTQSAGRLMRAIFEIVLSRGWAQLTDKTMNLCKMIDKRMWQSMSPLRQFKKLPEEVIKK
IEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHQFPKLDLAVHLQPITRSTLKVEL
TITPDFQWDDKIHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLVTFFVPVFEPL
PPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNSAFEAVYQ
NKFPFFNPIQTQVFNAVYNSDDNVFVGAPNGSGKTICAEFAILRMLLHNAEGRCIYITPM
EALAEQVFVDWHQKFQDILNKKVVLLTGETSTDLKLLGKGDIIVSTPDKWDILSRRWKQR
KNVQNVSLFIVDEAHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAH
WLGCSTTATFNFHPNVRPVPLELHIQGFNVSHTQTRLLSMAKPVYHAIMKHSPSKPAVVF
VPSRRQTRLTAIDILTFCAADVVPQRFLHCTEKDLAPFLEKLNDSTLKETLANGVGYLHE
GLSATERRIVEQLFNSGAVQVVVASRSLCWGINISAHLVIVMDTQYYNGKIHSYVDYPIY
DILQMVGRANRPMQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCLHDHFNAEIVT
KTVENKQDAVDYLTWTFLYRRMTQNPNYYNLQGMSHRHLSDHLSELVETTLHDLEQSKCI
SIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKIRGLIEIISNAAEYKNIPIRH
HEDTLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAVRL
IQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPFFTSEHIKRCTDKGVESI
FDIMEMEDEDRSALLQLSDVQMADVARFCNRYPNIELSYEVAEKDNIKSGSPVLVQVQLE
REEEVTGPVIAPLFPQKREEGWWVVIGDPKSNSLISIKRLTLQQKAKVKLDFVAPAMGIH
NYTLYFMSDAYMGCDQEYKFGVDVKEADSDGDSDSD
NT seq
6411 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgttaccgctcgtagcctgcagtacgagtacaaagctaactcgaacttggtc
ttacaagctgatcggtctctgatcgaccgaacacggagagatgaacccaccggagaggtg
ctttccctggtgggaaagctcgaagggagcaagatgggtgataaagcccagaggaccaag
cctcaaaagctggaggaacgtcgagacaagaggcggaaaagagatgaagacaggcatgat
attaataaaatgaagggctttacacttctgtcagaagggattgatgacatggtgggcatc
gtgtacaagcctaaaactaaggagaccagagagacgtatgaagtgctgcttagctttatc
catgccgctttaggagatcagcctcgggatatcctgtgtggagcagctgatgaagtattg
gcagtgctaaagaatgataaaatgagagacaaggaaagacgacgagaggtcgagcaactt
cttggtccagctgatgacacacgttaccatgtgttggttaatttgggcaagaagatcaca
gactacggaggggacaaggatctacagaacatggatgacaacattgatgaaacctacggt
gtgaatgtccagtttgagtcggacgaagaggagggagatgaggacttgtttggagaggtc
cgtgacaaacactcggatgaggatagtgaaggagaggaggcaaatgtgggctgcactctc
acggccaacctcggtgtcaccggtgacgtgatgactgtgaagaagaaagatctacatcct
cgagacatcgacgctttctggctccagcgtcagctcagtcgtttctatgacgatgccatt
gtgtcccaaaagaaagccgatgaggttttggagatcctgaagaccaccagtgatgacagg
gaatgtgagaaccagctggtgttgcttttgggcttcaacaactttgatttcatcaaaatt
ctccgtcagcaccgacgcatgatccagtattgcaccatgctggcgagtgctcagagcgag
gcggaaaaggaacgaatcaccgggaagatggagtcggatccagagctgtcaaagatcctt
taccagcttcaggagacggagaaagaggatatcattcgtgaggagagatctcgcagggag
cgggtgaggaagtctcgcgttgatgacttggaatcgatggacatggatcacggagaggcg
gtggcaccacggcagctgctcgatctcgatgacctggccttcactcagggaagccatttt
atggccaataagcgctgccagctgccggatgggtcattccgtaaacagcgtaaaggttac
gaagaggtccacgtaccggcgctcaaagccaaaccttttgcagaaaatgaggtgcttgtt
gggatcgacaagttgcccaagtacgcgcaggctgcgttcgaggggttcaaaaccctgaat
cgcatccagagcaagctgttcaagaccacaatggagacggatgagaacctactgatttgt
gcacctacgggagccggtaagaccaacgttgcattaatggcaatgctgagagaaatcggg
aagcatataaacatggacggaaccatcaatatagatgattttaaaatcatctatattgca
cccatgcgctccctcgtacaggagatggtggggagctttagtaagcgtctggcaagttat
ggcatcacagtgtctgagctgactggagaccaccagctctgtaaggaggagattaacgcc
acgcagattatcgtctgcacccctgagaagtgggacatcatcacacggaaaggcggggag
cggacctacactcagctcgtgcggctcatcatcatcgatgaaatccacttgttgcacgat
gaccgtgggcccgtgttggaatctctggtggcgaggaccatccgtaatgtggagctgacg
caggaggacgtgcgtctgctgggcctcagcgccaccctgcccaactacgaggatgtggct
acctgcctgcgtgtggaccctgccaagggattgttctactttgataacagtttccgcccc
gtccctctggagcagacgtatgtggggatcaccgagaagaaagccatcaagcgtttccag
atcatgaatgagatcgtttatgagaaaataatggaacatgctggtaaaaaccaggtgttg
gtttttgtccactccagaaaggaaacggggaaaaccgccagagctataagagacatgtgt
ttggagaaggacaccctgggcctgttcctcagagaaggttcagcgtccaccgaagtctta
cgaactgaggctgagcagtgcaagaacctggagctcaaggatttgctgccttatggcttc
gcgatacaccacgctggcatgaccagagtcgaccggacgctggttgaggatctgtttgct
gacaagcacatccaggttctggtgtccacggcgactctggcctggggggtcaacctgcca
gcacacaccgttatcatcaaaggcacacaggtgtacagtccagagaaaggccgatggact
gaactgggagctctggacatcctccagatgctgggtcgagctgggcgtccccagtatgat
accaagggcgagggcatcctgatcacgtcccacgcagaactgcagtactacctgtccctc
ctcaatcagcagctgcccatcgagagtcagatggtcagcaagctgccggacatgctcaac
gccgaggtcgtgctgggtaatgtgcagaacgcaaaggacgccgtgaattggcttggctac
acctacctgtatgtgcggatgctccggaacccaacgctgtatgccgtctcccacgacgac
cggagttcagaccccctgctggagcgacgcaggctggacctggtgcacaccgcgtccagc
gtcctggacaagaacaacctcataaaatacgacaagaggactggcagcttccaggttaca
gacctgggccgcatcgccagtcacttttacgtcactcacgactccattcaaacctacaac
cagctgctgaagcccacgctcagtgagatcgagctcttcagagtcttctcactttcctct
gagtttagaaacatcactgtgagagaggaggagaagctggagctgcagaaactgctggaa
agagtgccgataccggtgaaagaaagcattgaagagcccagtgcaaagatcaacgtgttg
ctgcaggcgtacatctcccagctcaaactggaaggctttgccctgatggccgacatggtg
tatgttacacagagcgccgggagactgatgcgagccatatttgagatcgtcctcagcaga
ggatgggctcagctgacggacaagaccatgaatctttgcaagatgatcgacaagagaatg
tggcagtcaatgtccccgctgcgacagttcaagaagctcccggaggaggtgatcaagaag
atcgagaagaagaacttccccttcgagcgcctctatgacctaaatcataatgagatcggc
gagctcatccgaatgccaaaaatgggcaagaccatccacaagtatgtgcaccagttcccc
aaactggacctggccgtgcacctgcagcccatcacgcgctccacattgaaagtggagctc
acgatcaccccggacttccagtgggacgataagattcacggatcttccgaagctttctgg
atcctggttgaggacgtggacagcgaggtcatcctccaccacgagtacttcctgctcaaa
gccaagtacgcccaggatgagcacctggtgaccttctttgtcccggtgtttgagcctctg
cctccgcagtacttcatccgtgtcgtctcggaccgatggctctcctgcgagactcaactt
cctgtctccttccgtcacctgatccttcccgagaagtacccaccgcctactgagctgctg
gacctgcagccgttgcctgtcaccgcactcaggaactcggcctttgaggccgtctaccag
aacaagttccccttcttcaaccccattcagacacaagtcttcaatgccgtctacaacagt
gatgacaacgtgtttgtcggggctccaaacggcagtgggaagaccatctgcgcagagttt
gctattctgaggatgctgctgcacaacgccgagggacgctgcatctacattactccaatg
gaagctctggcggagcaggtgtttgtcgactggcatcagaagttccaagacatcctgaac
aagaaggtggtgctgctgactggggaaaccagcacggatctgaagctcctggggaaaggt
gacatcattgtcagcacccccgataaatgggacatactgtctcgacgctggaagcagagg
aagaacgtccagaacgtcagccttttcattgtggacgaggcccacctgattggaggagaa
aacggacctgtgttggaggtcatctgctccaggatgaggtacatctcctcacagatcgag
cgtcccatccgcatcgtggccctcagctcctctctgtccaatgccaaagacgtggcccac
tggcttggctgcagcaccacggccacgttcaacttccaccccaacgtgaggccggtgcct
ctggagctgcacatccagggcttcaacgtgagccacactcagacgcgcctgctgtccatg
gccaaaccagtgtaccacgccatcatgaagcactctccctccaaaccggcggttgtgttc
gtgccgtcccgccgccagacccggctcaccgccatagacatcctgaccttctgcgctgcc
gatgtggttcctcagaggttcttgcattgtaccgagaaagacctggctccatttctggag
aaactcaacgactccaccctgaaggagacgctggccaacggcgtgggttacctgcacgag
ggcctctccgcaaccgagcgcagaatcgtggagcagctcttcaactcgggagctgttcag
gtggtcgtggcctctcgctcgctctgctgggggatcaacatctcagcgcacctcgtcatc
gtcatggacacccagtactacaatggcaaaattcattcctacgtggactaccccatttac
gacatccttcagatggtgggcagggccaacaggcccatgcaagacgatgagggacgctgc
gtcatcatgtgtcagggctccaagaaggacttcttcaagaagttcctgtatgagccgctg
ccggtggagtcccacctggaccactgcctccacgaccacttcaatgccgagatcgtcacc
aaaactgtggagaacaagcaggacgctgtggactacctgacgtggacgttcctctaccgc
cggatgactcagaaccccaactactacaacctgcaagggatgtcccaccgtcacctgtcg
gaccacctgtctgagctggtggaaaccacgttgcacgacctggagcagtccaagtgcatc
agcatagaggacgagatggacgtggctccgctcaatctgggcatgatcgctgcctactac
tacatcaactacaccaccatcgagttgttcagcatgtccctgaatgccaagaccaagatc
cgcggcttaattgaaatcatctccaacgccgccgagtacaagaacattcccatcagacac
cacgaggacacgcttctgcgtcagctggcgcagaaggttccccacaaactgaacaacccc
aagttcaacgacccccacgtgaagaccaacctcctgctgcaggcgcacctgtccaggatg
cagctgagcgccgagctgcagtccgacaccgaggagatcctgagcaaggccgtgcgtctg
atccaagcctgcgtcgatgtcctgtccagtaacggctggctgagtcctgcgctggcggcc
atggagctggctcagatggtcacccaggccatgtggtccaaggactcctacctcaaacag
ctgcccttcttcacctcggagcacatcaagcgctgcaccgacaagggggtggagagcatc
tttgacatcatggagatggaggacgaagacagatcggcgctgctgcagctgtcggacgtg
cagatggccgacgtggctcgcttctgcaacagataccccaacattgaactgtcctatgag
gtggcggagaaggacaacatcaagagcgggagtccggtcctggttcaggttcagttggag
agggaggaggaggtgaccgggcccgtcatagcaccgctgttcccacagaaacgtgaggag
ggttggtgggtggtgatcggagaccccaagtccaacagcctgatctccatcaagaggctg
acgctgcagcagaaagcaaaggtgaaactggactttgttgctccggccatgggcatccac
aactacacgctgtacttcatgagcgacgcctacatgggctgtgaccaggagtacaagttc
ggcgtcgacgtgaaggaggcggacagtgacggagacagcgattcagactga
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integrated database retrieval system