Trichinella spiralis: Tsp_06348
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Entry
Tsp_06348 CDS
T01609
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase mog-4
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
tsp
Trichinella spiralis
Pathway
tsp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
Tsp_06348
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tsp03041
]
Tsp_06348
Enzymes [BR:
tsp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Tsp_06348
Spliceosome [BR:
tsp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
Tsp_06348
Complex C
U4/U6.U5 tri-SnRNP related factors
Tsp_06348
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_N
HA2_C
DEAD
AAA_22
AAA_19
AAA_30
SLFN-g3_helicase
nSTAND3
Helicase_C
T2SSE
SRP54
Reprolysin
ATPase
TsaE
Motif
Other DBs
NCBI-GeneID:
10908560
NCBI-ProteinID:
XP_003378399
LinkDB
All DBs
Position
Unknown
AA seq
690 aa
AA seq
DB search
MDLEYKKNVLYLATEYKKADLIVKADRYHMPDQVKEIPKKYTEIDEKEQGPGSEQRKWED
EKLMNALFKYGAKDAKQKMAQDFSLVLEDTVDFVKALQLPGTEEKENAEELARLKQRQSV
EETRRSLPVYPFREDLLKAIEDHQVLIIEGETGSGKTTQIPQYLYEAGYCKDGKKVACTQ
PRRVAAMSVAARVATEMNVKLGLQVGYSIRFEDCTSEKTVIKYMTDGMLLREFLSEPDMQ
MVIIDEAHERTLHTDILFGLVKDIARFRTDMKLMISSATLDAEKFSSFFDDAPIFRIPGR
RFPVDIYYTKAPEADYIDACIISILQIHLTQPLPGDILVFLTGQEEIDTILEALQERCRQ
IGTKMKELAKIFEPTPPGARKVVLATNIAETSVTIDAWAYQKELEDQPVPEIQRTNLGNV
VLMLKSLGIHDLIHFDFLDPPPQEALVLALEQLYALGALNHRGELTKLGRRMAEFPCDPM
MSKMLMASEKYHCTEEILTICGMLSVNAAIFYRPKDKIVHADTARQSFWVPGGDHLTLLN
VYNQWKDTDYSIQWCFENFIQHRSMKRARDVRDQLEGLVDRVEIEVESNPTDTVAIRKAI
TAGYFYHTARMSKSGHYQTVKNHNTVYIHPNSSLFEDRPRWVLYHELIIEIENTWLLEVA
PHYYKQREVDDTTNKKLPKIVGKTGEELRR
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atggatttggagtacaagaagaatgtgctatatttggcaacagaatataaaaaagcagat
ttaattgtcaaagcggatcgatatcacatgccggatcaggtgaaagagattccaaaaaag
tacactgagatagatgagaaagaacaaggtccaggaagtgaacagcgtaaatgggaagat
gaaaaattgatgaatgctcttttcaagtatggtgccaaagatgcaaaacaaaaaatggcg
caagatttttctctcgttttggaagatacggttgattttgtgaaagctctgcaactaccg
ggcacagaggaaaaagaaaatgctgaagaattagctagattaaagcaacgacaaagtgtt
gaagaaacacgtcgatctttgccagtgtatccgtttcgtgaggatcttctgaaagcaatt
gaagatcatcaggtattgataatcgagggtgagacgggttctggcaagacaactcaaatt
cctcaatatctgtacgaggctggatactgtaaagatgggaaaaaagtcgcctgcactcaa
ccgagacgagtggctgctatgagcgttgctgctcgagttgcgacggaaatgaacgtcaag
cttggattgcaagttggttacagtattcgtttcgaggattgcacttcagaaaagacagta
atcaaatacatgactgatggaatgcttctgcgggaatttctttccgagccagatatgcag
atggttattattgacgaagctcacgagcgcactttgcacacagatattttgttcggcttg
gttaaagatattgctcgcttcagaacagatatgaaattgatgatttccagtgccactttg
gatgcagaaaaattcagcagtttcttcgacgatgcaccaatttttcgtattcctggtcgt
cgttttccagtggatatttactatacaaaagctccagaagcggactacatcgacgcgtgt
ataatttccattttacaaatacacctcacccaacccctgccgggggatattttggttttt
ctgactggccaagaagaaatagacaccatattggaagcgttgcaagagcgatgccgtcaa
attggcacaaaaatgaaagaactggcgaaaatttttgagccaacaccaccaggagcgagg
aaagtagtgttggcgacaaacattgctgaaacttcagtcacaattgatgcttgggcgtat
cagaaagagttggaagatcaaccagtgcctgaaattcagcgtaccaatttgggcaacgtg
gttttaatgttgaaatcacttggcattcatgaccttattcattttgactttcttgatcca
cctcctcaagaagctctcgttttggctctggagcagctgtatgcattgggtgctctgaat
caccgtggtgagttgaccaaacttggccggcgtatggctgaatttccatgtgatccgatg
atgtcgaaaatgttgatggcttcagaaaaatatcattgtacggaagaaatattgaccatt
tgtggtatgctttccgtgaatgcggcaattttttatcgacccaaagataaaattgtgcat
gcggatactgctcggcaaagtttttgggttcctggaggtgatcatctaactttgctcaac
gtttacaatcagtggaaagatacggattattcaattcagtggtgtttcgaaaattttatt
caacatcgatccatgaaacgagcccgcgatgttcgtgatcaattggaaggtctagtagat
cgagttgaaattgaagttgaatcaaatcctacagatactgtcgctattcggaaagctatt
acagcaggatatttttatcacaccgctcgtatgtcgaaaagtggacattatcagacggtg
aaaaaccacaatacagtttacatacatccgaatagcagtctttttgaagatcgaccgcga
tgggttctatatcatgaattgataattgaaatagaaaatacttggcttttggaagtggct
cctcactattacaaacagagggaggtggatgatacaactaataagaagttgccaaaaatt
gtcgggaagactggtgaagagttgaggcgttga
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