Trichinella spiralis: Tsp_09828
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Entry
Tsp_09828 CDS
T01609
Name
(RefSeq) putative mediator of RNA polymerase II transcription subunit 1
Organism
tsp
Trichinella spiralis
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Med1
DUF4695
Motif
Other DBs
NCBI-GeneID:
10907764
NCBI-ProteinID:
XP_003370614
LinkDB
All DBs
Position
Unknown
AA seq
1150 aa
AA seq
DB search
MNLTFVRTPGSANNQSCFITADCFFLEISAEETGSVFLVNVTHEKQTSESVLLRDIINDK
RWTELQRHLWGLCSAYIPCKDITLPVVEYLRTSDMYFFRRREVGDPPRLARYGKCSRRTI
FVNQYAISQCSGPLLEDQLHCYTVDLEGCLTEGVVLEKIYWTNLEVLHKILPILRTEALF
KHIFTSFIRNITTTQKQFAQKMMFRRDIHVIPSPDLSILECQVKLPREREFFYIVFRLAP
INEISVKVGGVVDNADVNLNDVAYEVFSRVWSIPVTIRALVKQLLCLSERNVVVAAAGDG
NSGNGDHQNDVVLMQIDCDRSLHLSTDSNCAAHSSVSIPDGGPNLLDLFKKPKVWRELIP
PRRCAGRRDQRSRQQMAPPLAQQCCASAAGQLPAPVAAMAGAAPFGKVGPNLKSRHFSST
SETLTELDELCQLSSSCAEGNGHQSEHVSACGDSAVADGGEQKSSIQDTIDSVLGSVRFP
GSMAETPMSRSSDSTGDVFDYETRSTTTAGMSIDQGGRSLSSSVCCADDLSIAAASASAP
TLDVDFWPPAGGVERLDVRGALLNRGMRRRRRCRKAFANTGDRALDMVLKEMRKAERLVR
GASSTRRPRRSRLATATASFTADMREVASKGSSSGGKDEQRKSLKLAANANASGGAGAAT
LNTWTQPSSSVFRSLSDAAGESCSSRSSSPPPQLVKPASKRKNSLDVVIGKLMDKVGTSP
TKLDPSSDVPDSAGDKQRHLYGFCFSPTASQQQKSGTTAASVSASEFTIHKRGDCSTTTA
MATSTGELSDAPEGGIKLVIKKGVIKLKSARHGRGAGAGRFVETGAPSARPRVSSPASAG
DRLAASKFELLKQKMQARKIKRQSSTEKSRQRGPRSGALAAVSKTATNRSKLSTVGSSSS
GVAELPSVFPGAEVATATTTSANATTTASVAVAPLTVVEKRMADGPPMALVVNDGRASPA
GILRMKPPLLAVQQVPPPCVGGSSKPLIRRSRPVPLPLPPRSLVATGPHFAGPPAVELAL
PTGPAVPRYVRRTLLPNPPLQTASSPRPPPPQPLLELNKHHQQQMLVHSTTQQRPTKQEL
LNPMTNQISPKSASPDPTGLVIDDNLNTTAAISSPQKNAEEVDVLSPGLRIAVDEGDETK
GPTTHSSSTT
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atgaatttaacttttgttcgaactcccggctctgccaataaccagagttgttttattact
gccgattgcttttttctggaaatttctgctgaagagacgggttctgtattcttagtgaac
gtcacacatgaaaagcaaacatcggaaagtgttcttttgcgtgacattataaatgataaa
cgttggactgaattgcaaagacatttgtggggtctttgctcagcttacatcccatgtaaa
gacatcactcttcccgttgttgaatatttgcgaacatctgatatgtatttttttcgacgt
cgagaagtgggtgacccgcctcgactagctcgctatggaaaatgttcaaggagaacaatt
tttgtcaatcagtatgcaatcagtcaatgctctgggccattgttggaagatcaactgcac
tgttacactgttgatcttgagggatgcttgacagaaggtgtagttttggaaaagatttat
tggaccaacttggaggtgctgcacaagattttgcctattttacgcactgaagcattgttc
aaacacatattcacttcattcattcgcaatatcaccactacgcaaaagcaatttgcacag
aaaatgatgtttcgccgtgatattcatgtaattccatcgcctgatttaagcattctggaa
tgtcaggtgaaacttcctcgagagcgtgaatttttttacattgtttttcgattggcgcca
attaacgaaatcagtgttaaggtcggaggtgttgttgacaacgcagatgtgaatttgaat
gatgtcgcttatgaagttttctcgcgagtttggtccattccggttacaattcgcgcgttg
gttaagcagctgttatgtttgtctgaacgaaacgttgtcgttgctgctgctggtgatggc
aatagtggcaatggtgaccaccagaacgatgtggttttaatgcagattgattgtgatcga
tcattacatttgtccactgattcgaattgcgctgctcattcttctgtttcaattcctgat
ggtgggcctaatttgcttgacttgttcaaaaagccaaaagtgtggcgggagttgattccg
ccgagacggtgcgccggcaggcgcgaccagcggtcgagacagcagatggcgccccctttg
gctcagcaatgctgcgcgtcggcggcgggccagttgccagctccggtagctgcaatggca
ggggcggcaccgtttggcaaggttggaccaaacttgaaaagtcgccatttcagcagcact
tccgaaacgctgactgaactggacgaactttgccaactgtcttcatcctgcgccgaagga
aacggccaccagtcggagcacgtctccgcttgcggcgactcggcagttgccgacggcggc
gagcagaagtcttcaatacaagatactatagacagcgtgcttggttcggtcagatttcct
ggctcgatggcagaaactcctatgtccaggtcgtcggacagtacgggagacgtgttcgat
tacgaaacgcgatccacgacgacggccggcatgtccatcgaccagggcggcaggtcgttg
tcgtcgtcagtttgctgcgctgatgatttgtcgatcgcggcggcatccgcgtccgcgccg
acgttggatgtcgacttctggccgccggcaggtggcgtcgagcggctcgacgtgcggggc
gctttgttgaatcgcggcatgcgccggcgccggcgttgtaggaaagcgttcgccaatacc
ggcgacagggcgctggacatggtgttgaaagagatgcgcaaggccgagcgtctggtgcgc
ggcgccagcagtaccaggcggcctcgtcgctcgcgcctggcgaccgcgaccgcgtcgttc
acggctgatatgcgcgaggtggcgtcgaaaggttcgtcttcgggcggcaaggacgagcag
aggaaatcgctcaaactggctgccaatgccaatgccagtggtggcgccggcgccgcgacg
ctgaacacttggacgcagccgtcttcgagcgtgtttcgttcgctttcagacgcggccggc
gaatcctgctctagccggtcgtcatccccgcccccgcagttggtcaagccggcatcgaag
cgcaaaaattcactggatgtggtcatcggcaagctgatggacaaagtcggcaccagtccg
accaagttggacccgtcttcggacgtgcccgactcggccggcgacaagcagcgtcacttg
tacggcttttgcttttcgccgacggcaagccagcagcagaaaagtggtacgacggcggcg
tccgtctcggcgtcggaatttaccatacacaagaggggcgactgctcgacgacgacggca
atggcgacttcgaccggcgaattgtccgacgcaccggaaggtggcatcaagttggtaatc
aagaaaggtgtgataaagctgaagtcggctcgtcacggccgcggcgctggcgccggtcgt
tttgttgaaactggcgcgccttccgcacgcccgcgcgtttcgtcgccagcgtctgccggc
gatcggctggcggcgagtaagttcgaattgttgaagcagaaaatgcaagcgcggaaaatc
aaacggcaaagttcgacggaaaaatccagacaacgcggtcccagatccggggcgttggcg
gctgtatccaaaactgccaccaacaggtcgaaattgtcgaccgtcggttcgtcgtcgtcg
ggcgtggccgaattgccgtccgttttccctggtgccgaggtggcgacggcgactacgacg
agcgccaacgcgacgacaaccgccagtgtagccgtggcgccgttgacggtcgtggagaaa
cgtatggccgacggcccgccgatggcattggttgtcaatgacggacgagccagtccggcg
ggcattctgcgaatgaagccgccgcttctcgccgtgcagcaggtacctcccccgtgcgtc
ggtggcagcagcaagccgctgattagacggagtcggccggttccgctgccactgccaccg
cggtcgcttgttgccactggcccgcattttgccgggccaccggccgttgagctcgctttg
cctactggtccggcggttcctagatacgtacgcaggacacttttgccgaatccgcctctg
cagacggcttcttcgcccagaccaccgccgccccaaccactgctcgaattgaacaagcat
catcagcagcagatgcttgttcattcgaccacgcagcaacgacccacaaaacaagaactg
ctgaatccaatgacgaatcaaatttcaccaaaatccgccagcccggatccaacagggcta
gttattgatgataatttgaacacgacagcggcaataagcagtcctcaaaagaatgcggaa
gaggttgatgtactttcgccgggactgcgaattgccgttgatgagggcgacgaaaccaaa
ggccctaccactcactcgtcgtccacaacatga
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