Thermothielavioides terrestris: THITE_2111447
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Entry
THITE_2111447 CDS
T02228
Name
(RefSeq) hypothetical protein
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
ttt
Thermothielavioides terrestris
Pathway
ttt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ttt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
THITE_2111447
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ttt03019
]
THITE_2111447
Messenger RNA biogenesis [BR:
ttt03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
THITE_2111447
mRNA degradation factors
3'-5' decay
Pan complex
THITE_2111447
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pan3_PK
Pkinase
PK_Tyr_Ser-Thr
Motif
Other DBs
NCBI-GeneID:
11518283
NCBI-ProteinID:
XP_003651326
JGI:
Thite2_2111447
UniProt:
G2R2C2
LinkDB
All DBs
Position
2:join(706262..706331,706389..706503,706828..706958,707015..707106,707164..707497,707551..707703,707776..708827)
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AA seq
648 aa
AA seq
DB search
MAATRYSSNDLRRQVGSPRSKGRENKDTLCRNILIYGNCRYEDQGCTFNHDQNKNPPPQG
DVVKKAFNVDSPSFTPASQQSAPAKKSTLSSQAASAAPFTPRGVGTPSLPQTVEPSVFNP
AAIREFTPQNYDISNTNTNGVTQDNGLYNDPFTAMGSMASALPAAGQFNLYAAEHNALTA
SGAQFYPQHGAFPTAPLQPPNYHLYQPFDTYRQDLQPWQRATYDFFMPAKMREEIQRKMF
ATQQVMPNSGLPQLERWHSLFPLDTNNRKNTSSFGYPSWVYKAQNSRTGSHYALRRLEGY
RLTNEKAILSVMKEWKKIKNASIVTVHEAFTTREFGDSSLIFAYDYHPLSKTLQEQHLQP
AHGNRYRAPSAVPENVLWGYICQIANALKTIHSNKLAARCLEPSKIILTDHNRIRLAACA
ILDVVQFEINTKTVQELQQEDLVKFGRLVLSLATGAPPAHLNNIQAALDSLGAKYSANLR
DAVAWLIAPPNPGESKSIDNLISGVATHMTTFFDLSLQDNDEKQFHLAKELENGRVARSV
MKLMTVVERGDLGGTQAWSETGDRYQLKLFRDYVFHRVEADGKPNLSIGHMLTCMSKLEA
GVDEMVALTSRDNETVFVLTYRELKKMFDRSFNELVKHSKTGAPGANN
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atggccgcgactcgatactcttcgaatgacctgcgtcgtcaggtcggttcgccgaggtcc
aagggtcgagagaacaaggacacgctttgtcggaacattctcatatatggaaattgtcgc
tatgaggatcagggatgcaccttcaaccatgaccagaacaagaaccctcccccccaggga
gatgttgtcaagaaggcgttcaacgtcgattctccgtcatttacgcccgcgagccagcag
tccgcgccggctaagaaatctactctttcctcacaggccgcaagtgccgctccattcacc
cctcgtggtgtaggcacgccgagcctgccgcagaccgtcgagccttcggtgtttaacccc
gcagccatcagggagttcacaccacagaactacgacatcagcaacacgaacaccaacggg
gtgactcaggataatgggctgtacaatgacccctttacagctatgggatccatggcctca
gcgctgcccgccgccggccagttcaatctgtatgccgccgagcacaacgctctcaccgct
tctggagcgcaattctacccccagcacggggcgtttcccacggcccccctacaaccaccc
aactaccatctctatcaaccattcgatacatatcggcaagatctgcagccgtggcaacgg
gcaacctatgatttcttcatgccggccaagatgcgggaagagatccagaggaagatgttt
gccactcagcaggtgatgccaaattccgggctgcctcaacttgagcgctggcactctctg
tttcccctggacaccaacaacagaaagaacacttcctcttttggctacccgagttgggta
tacaaggctcagaatagccgaactgggtcgcactacgccctacgaaggcttgaaggttac
cgtttgaccaacgagaaagctattctttccgtcatgaaggagtggaagaagatcaaaaac
gccagtatcgtgacggttcatgaagcgttcaccacgagggagttcggcgacagctccctc
atcttcgcatacgactaccaccccctgtcgaaaacgctgcaagagcaacatcttcagccc
gctcacggcaaccggtatagagcacccagcgccgttccggagaatgtcctctggggatac
atttgccaaatcgccaatgcactcaagaccatccactcgaacaagctcgcagcccggtgt
cttgagcccagcaaaatcatcctcacggatcacaaccgcattcgacttgctgcgtgcgcc
atcttggacgtagtgcagttcgagatcaacaccaagactgttcaggagttgcagcaagag
gacctcgtcaagttcgggagactggtgctctcccttgccacgggcgctcctccagcgcac
ctcaacaacattcaagcggctctcgactcgctgggtgcgaaatactcggcaaacctcaga
gacgcagtggcctggctcatagcgcctccaaatccgggcgagtccaagagcattgacaac
ctcatcagcggcgttgccacgcacatgacgaccttcttcgatctcagtctccaagacaat
gacgagaagcagttccacctcgccaaggaattggaaaatggccgggtggcccgcagcgtc
atgaagctcatgaccgtggtcgagcgcggggacctcggtggcacgcaagcctggtcggaa
acgggggatcggtaccagctgaagctcttccgggactacgtgttccaccgcgtcgaggcc
gatgggaagccgaatctgtcgattggacacatgctcacctgcatgagcaaactcgaggcg
ggcgtcgacgagatggtggccctgaccagccgcgacaacgagacggtctttgtgctcacc
taccgtgagctcaagaagatgttcgaccgttcgtttaacgagctcgtgaaacacagcaag
accggcgctcctggagcgaacaactag
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