Verticillium alfalfae: VDBG_07406
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Entry
VDBG_07406 CDS
T02227
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
val
Verticillium alfalfae
Pathway
val03020
RNA polymerase
val03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
val00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
VDBG_07406
09124 Replication and repair
03420 Nucleotide excision repair
VDBG_07406
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
val03021
]
VDBG_07406
03400 DNA repair and recombination proteins [BR:
val03400
]
VDBG_07406
Enzymes [BR:
val01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
VDBG_07406
Transcription machinery [BR:
val03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
VDBG_07406
DNA repair and recombination proteins [BR:
val03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
VDBG_07406
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
DIRP
Motif
Other DBs
NCBI-GeneID:
9527844
NCBI-ProteinID:
XP_003002835
UniProt:
C9SR21
LinkDB
All DBs
AA seq
1756 aa
AA seq
DB search
MANLYFTHSSAPVKTIEEIQFGLMSPEQIKTMSVCHVIYPETMDETRTKPRDSGLNDPLL
GSIDRQFKCKTCTQAMGECPGHFGHIELAKGVYHPGFIKKVKKILEIVCLECYKVLGDRN
DPEFEQAVNTRDPKQRFHRVWLHCKKKKRCENELKEEKDGPDSFPELRRQNQVPHDGCGN
VKHDIRAKALQLIEKVTSTTEDGVKDVKEVPITADRAHGILRRISDDDLRDMGLNLDYAR
PEWMIITVLPVPPPPVRPSISMDGTGQGMRNEDDLTYKLGDIIRANGNVRQAIREASPAH
IARDFEQLLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDF
SARTVITGDANLSLDEVGVPRSIARTLTYPETVTPYNIGKLHELVQNGPNEHPGAKYVIR
TDGTRIDLRHHRRAGQISLEYGWKVERHLMTGDYIIFNRQPSLHKESMMGHRVRVMPYST
FRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEIKELCMVPINIVSPQRNGPLMGIVQDT
LAGAYKLCRRDVFLTKEEVMNIMLWVPNWDGIIPVPAILRPSPRWTGKQIMSMAIPEIVS
LNSLPDTKEDNSVKDEGLLIQSGQLMYGLLTKKVIGAASGGIVHIVYNEHGPEAAMKFLN
GVQQTVNYWLLHNGFSIGIGDTIPDTLTIEKVQGHIDEQKDEVARLTKQATNNELEPSPG
MNIRETFESKVSRALNTARDKAGTTTQKSLKDLNNAVTMALSGSKGSSINISQMTALVGQ
QIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDT
AVKTAETGYIQRRLVKALEDVSAKYDGTVRNSLGDIIQFLYGEDGLDAIYIEKQRMDFLN
MSNKKFDDRYKLDVMDANKPEELDWLEYGNEIAGDPASQQLLDEEYEALAEDRRVVREIN
FRRKDDESMQLPLNIVRIMETAKKLFNVQDFQRSDLTPQDVIPAVSSMLDRMTVVRGPDG
LSKEADYNATILFKAHIRSRLAFKGVACLQRLNKLAFSHVLGELEGRWAKASISPGEMVG
VLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLAQNIKTPSMVVYLSEGNA
TQEAAKALRSTVEHTTLRSVTAMTEIYYDPDLENTVIPSDTDMVESYWAIPDDSHESANL
QNRWLLRITLDRQKMLDKELTVEDVASRIKADYPNDCNLVFSDNNADEQVIRIRTIKPDK
GGDDESKVEDDVMLKQFETHLLDTLTLRGVLGIERAFLNKETKLIETDDGALLAAKADDR
CQEWYLDTSGTSLSSVLMVEGVDATRTYTNHLWQINEVFGIEAARGALVRELTQVLAFDG
SYVNHRHLALLVDVMTYRGGISAVTRHGINRADTGALMRCSFEETVEILLEAAAVGELDD
CRGISENVMLGQMAPMGTGHFEVLLDPKMLETVISDNSRMGLVPGMPVKGGEMGGAATPY
DTGSPLDSGYLSLGSPSSNEGNFSPIVGAGSDDNTGFGTEYGGTYGGFGGASPGRAGATS
PFTTSPTSPFSSFAGAGGYSPTSPGGGYSPTSPLMDGGARYATSPQFSPSSPSFSPTSPV
HRPTSPASPNYSPTSPSYSPTSPTSPRHYSPTSPAQFNSPTSPSYSPASPSYSPTSPNLH
GAGPTSPSYSPASPSWSPTSPEHSYSPTSPSFQRPAMQQSPTSPNYSPTSPSFSPRTPGP
SGSGKPVVSYISSLIT
NT seq
5271 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacctctacttcacgcactcaagtgcgcccgtcaagacgattgaggaaattcag
tttggtctcatgtcgcccgaacagatcaagacaatgagtgtctgtcacgtcatctacccc
gagacgatggacgagacgcgtaccaagccacgcgacagcggtctcaacgaccctcttctc
ggttccatcgatcgtcaattcaagtgcaagacgtgcacgcaagccatgggcgaatgtcct
ggtcattttggtcacattgagctcgccaagggcgtctaccacccgggtttcatcaagaag
gtcaagaagattctcgaaatcgtctgccttgagtgttacaaggtcttgggtgatagaaat
gaccctgaattcgaacaagctgtgaacacgagagaccccaagcagcgctttcatcgtgtc
tggcttcattgcaagaagaagaagcggtgcgagaacgagctcaaagaggagaaggatggc
cccgattctttccccgagctgaggaggcagaaccaggtcccccatgatggttgtggcaac
gtcaagcacgacatccgcgccaaagcccttcagctcatcgagaaggtcacgtcaacgact
gaagacggcgtcaaagatgtcaaggaggttcccatcacggctgatcgcgcccacggcatt
ctgcgtcgcatctccgacgatgacctgagggatatgggtcttaacctcgactacgctcgc
cctgagtggatgatcatcactgttctcccggttccccctcctcctgtacgtcccagtatc
tctatggacggtacaggtcagggtatgaggaacgaggatgatttgacctacaagcttggt
gatatcattcgtgccaacggcaatgttcgacaggccatcagagaggcttcgcccgctcat
attgccagagacttcgagcagctcctccaataccacgtcgccacatacatggacaatgac
attgctggccaaccacgcgctcttcagaagagcggacgtcctgtcaaagccatccgagct
cgtctcaagggcaaggaaggtcgtctacgaggaaacttgatgggtaaacgtgtcgacttc
tcagctcgtaccgtcatcactggtgacgccaacctgtccctggatgaggtcggtgttccc
aggagtattgccaggacgctgacatacccggagaccgttaccccttacaatattggcaag
ctgcacgagctggtacaaaatggaccaaacgagcaccccggcgcaaagtatgtcattcgc
acagacggcacaagaattgacttgcggcatcaccgacgtgccgggcagatctcgctcgag
tacggctggaaggtggagcgtcatctcatgactggtgattatatcatcttcaaccgtcag
ccgtcacttcacaaggagtccatgatgggtcacagggttcgtgtcatgccctactcgacc
ttcagactgaacctgtcagtcacatcgccttataacgctgatttcgatggtgacgagatg
aaccttcacgtcccgcaaagcgaagaaactcgcgccgaaatcaaagagctttgcatggtc
cctatcaacattgtctcgccgcagcggaacggtcccctcatgggtattgtccaggacacg
ctggctggtgcctacaaactttgccgccgtgacgtctttctcaccaaggaggaggtcatg
aacatcatgctgtgggttcccaactgggatggtatcatacccgttccagccatcctcagg
cctagccctcggtggacaggaaagcagatcatgagcatggccattcctgagattgtcagt
ctcaacagcttacccgacacaaaggaggacaactctgtcaaggacgagggtctgctgatt
cagtccggtcagctcatgtatggtctcctcacaaagaaggtcattggcgctgccagtggt
ggtatcgtccatattgtctacaacgagcacggcccagaagctgcgatgaagttccttaac
ggcgttcaacagactgtcaactactggctgctccacaacggtttcagtatcggtatcggt
gatactattcccgatacccttactattgagaaggtccagggccacatcgatgaacaaaag
gacgaagtcgcccgcctcaccaagcaggccacaaacaacgagctcgagccctctcccggt
atgaacattcgagagacctttgagagcaaggtctcgcgagctctcaacacagcccgtgac
aaggcaggtaccacaacacagaagagtctgaaggatctcaacaacgccgtcactatggct
ctgtctggctccaagggttcgtccatcaacatctcgcagatgactgcgttggtcggtcag
caaatcgtcgagggaaagcgtattcccttcggcttcaagtaccgcactctgcctcacttc
accaaggatgattactctcctgaagcccgcggtttcgttgagaactcgtacctccgtggc
ctcactcctagcgaattcttcttccacgccatggctggtcgtgagggtcttattgatact
gctgtcaagactgccgagacgggttacatccaacgtcgtctagtaaaggcgcttgaagac
gttagcgccaagtacgatggcacggtccgtaattcgcttggcgatattattcagttcctc
tacggtgaagatggcctcgacgctatctacattgagaagcaacgcatggacttcctcaac
atgtccaacaagaagttcgacgaccgttacaagctcgatgtcatggatgccaacaaaccc
gaggaactcgactggcttgaatatggtaacgagatcgccggtgatcccgcctctcagcag
cttcttgacgaagaatacgaggccctggccgaggaccgtagggtcgttcgagagatcaac
ttccgcaggaaggacgacgagtcgatgcagctgccgctcaacattgttcgcatcatggag
acagcaaagaagctcttcaatgtgcaagacttccagcgcagtgacctgacgccgcaggac
gtcatcccggccgtctcgtctatgcttgacaggatgactgtggttcgtggtccggatggt
ctttctaaggaggccgactacaacgccaccattcttttcaaggctcacattcgttcgcgc
ctcgcattcaagggcgttgcttgtcttcagcgcctcaataagctggccttcagccacgtt
ctcggcgagcttgaaggtcgctgggccaaggcgtctatcagccctggtgagatggttggt
gtcctggcagcccagtccattggtgagcccgcgacgcagatgacgctgaacactttccat
ttcgccggtgtgtcgtccaagaacgttacgcttggtgtgccccgtctcaaggagattctc
aacctggcacaaaacatcaagacaccttctatggttgtctacctgagcgagggcaacgcc
acccaggaggctgccaaggctctccgcagcactgtcgagcacaccactttgcgctccgtc
actgccatgactgaaatttactacgaccccgacctcgagaacacagtgattccatctgat
accgacatggtggaatcttactgggccattcccgatgactctcacgaatcggcgaacctg
cagaataggtggctgctgcgtatcacgctcgatcgccagaagatgctcgacaaggaattg
acggtcgaggatgtcgcatcgcgcatcaaggcggattatcccaacgactgcaacctcgtt
ttcagtgacaacaacgcagatgagcaggttattcgcatccgtactatcaaacctgacaag
ggaggtgacgacgagagcaaggtggaggacgatgtcatgctgaagcaattcgagacccac
ctgctcgacaccctgacccttcgtggtgtactgggcattgagagggccttcctgaacaag
gagaccaagctcattgagactgatgatggtgcgctattggcggccaaggcggacgacagg
tgccaggaatggtacctcgacacgtctggtacttcgcttagctctgttctcatggtggag
ggagttgacgccacgcgcacatacaccaaccacctgtggcagatcaacgaggtgttcgga
attgaagcggcccgaggcgcgctagtccgggagttgacacaggtgctcgctttcgacggt
tcctatgtcaaccatcgccatcttgcgctccttgtcgatgtcatgacctaccgtggtggc
atctctgcagtcactcgccacggtatcaaccgtgctgatactggtgcgctcatgcgttgt
tcgttcgaggagactgtcgagattctcctggaggctgccgccgttggcgaacttgacgac
tgccgtggtatttctgagaacgtcatgctgggacagatggcccccatgggcactggtcac
tttgaggttcttcttgatcccaagatgcttgagacggtcatcagtgacaactcgagaatg
ggtctcgtgcccggcatgcctgttaagggtggtgagatgggaggtgcggccacgccttat
gacactggttcgcctctggactctggttacctgtctttgggctcgccctcctccaacgag
ggcaacttctctcccattgtgggtgctggctcggatgacaacactggcttcggcaccgaa
tatggtggaacctacggcggttttggtggtgccagtcccggccgagcgggagctaccagc
cctttcaccacgtcaccgacgtcgcctttcagcagcttcgctggtgccggtggctactcg
ccaacctctccgggtggcggttactcgcccacgtcaccgctcatggacggaggtgctcgt
tacgcgacctcgccacagttcagcccgtcctcgccttcgttctctcctacgtcgcctgta
caccgcccgacgagccccgccagccccaactacagcccgacctcaccaagctactcacca
acgtctcccacgtctccgagacactactcgccgacctcccctgcgcagttcaattcaccg
acgtcgcccagctactcgcctgctagtcccagctacagcccgacgtcgcccaaccttcac
ggcgcgggacctacctcgccgtcgtactcgcccgcatcgccgtcgtggtctcccacgtcg
ccggaacactcgtactcgccaacgagcccgagcttccaacggccggcgatgcagcagtcg
ccgacgagccccaactactccccaacttctccctctttctcccccagaacccctggtccc
tcgggctccggcaaaccagtagtgagttacatttcatcgttgatcacatag
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integrated database retrieval system
