Vibrio anguillarum 775: VAA_01079
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Entry
VAA_01079 CDS
T01536
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
van
Vibrio anguillarum 775
Pathway
van03030
DNA replication
van03410
Base excision repair
van03420
Nucleotide excision repair
van03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
van00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VAA_01079
03410 Base excision repair
VAA_01079
03420 Nucleotide excision repair
VAA_01079
03430 Mismatch repair
VAA_01079
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
van03032
]
VAA_01079
03400 DNA repair and recombination proteins [BR:
van03400
]
VAA_01079
Enzymes [BR:
van01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
VAA_01079
DNA replication proteins [BR:
van03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
VAA_01079
DNA repair and recombination proteins [BR:
van03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
VAA_01079
NER (nucleotide excision repair)
GGR (global genome repair) factors
VAA_01079
MMR (mismatch excision repair)
DNA ligase
VAA_01079
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
VAA_01079
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
5_3_exonuc
DZR_2
Motif
Other DBs
NCBI-ProteinID:
AEH33700
LinkDB
All DBs
Position
I:complement(2291212..2293227)
Genome browser
AA seq
671 aa
AA seq
DB search
MMQTIEHKLSQLRETLHYHAVRYYVEDNPEIPDAEYDRLMRELLELESQYPELVTADSPS
LRVGGKPLEGFAQVTHEIPMLSLDNVFDENELDAFHKRMQDRIPSAHFNAFCCEPKLDGL
AVSLLYENGVLVQAATRGDGAVGENITENVRTISAIPLKLQGKGWPVRLEVRGEVFMPKA
GFERLNQQALKKGEKTFVNPRNAAAGSLRQLDSKITAQRPLNFYAYSVGVIEGAELASSH
YQRFLQLKGWGLPMCPETRLVSSMDEVKEYYQSILTRRAQLAYEIDGVVIKVDDIELQQK
LGFVARAPRWAIAYKFPAQEEITLLNDVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLH
NADEIERLGVKIGDSVIIRRAGDVIPQIVSVLLDRRSDTVVDIVFPQYCPVCNSDIERVE
GEAVARCTGGLVCQAQRKEALKHFVSRKALDVDGLGEKVIEQLVDKEMVSTPADLFRLKA
GQLTVLERMGPKSAQNIVNALNAAKMTTLPRFLYSLGIREVGEATAANLALHFGSLDKIR
QATHEELLEVQDVGVIVASHITSFFEQDKNQRVINELIELGIQWPNIEKPSQDAILPLLG
KVVVLTGSLSKLSRSDAKAALQELGAKVTGSVSKNTDILFAGEAAGSKLVKAQELGIEIR
SEQDLLELMKS
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgatgcaaacaatagaacacaaattaagccaacttcgtgagacgctgcattatcatgct
gtacgttattatgtagaagataaccctgaaattcctgacgctgagtatgatcgtttgatg
cgtgagctgcttgagttggaatcgcagtatccggagttagtcacagcggattcacccagc
ttgcgtgttggaggtaagcctttagagggttttgcccaggtgactcatgaaattccaatg
ctctctttagataatgtgtttgatgagaatgagcttgatgcctttcacaagcggatgcaa
gaccggataccgagtgcccactttaacgctttttgctgcgaacctaagcttgatggttta
gccgtgagtttgctttacgaaaatggtgtgttagtacaagccgccacgcgtggggatggc
gcggtcggtgaaaacattacggaaaacgtgcgaacgatcagtgctattccactgaagtta
cagggaaaagggtggcccgttcgtttagaagttcgtggtgaagtgttcatgcctaaagcc
ggttttgagcgattgaaccaacaagcactcaaaaaaggtgaaaaaacctttgttaaccca
agaaatgcagccgcagggagcttgagacagctcgactcaaaaatcacagctcaaaggccg
ttgaatttttatgcttacagtgttggtgtgattgaaggcgctgagttagcaagcagtcat
tatcagcgctttttgcagttaaaagggtgggggctgccgatgtgccctgaaacacgtcta
gtctcttcaatggatgaagtgaaagagtactaccaaagtatcttaactcgtcgcgctcaa
ctcgcgtatgagattgatggcgtggtgattaaagttgatgatattgaactgcaacaaaag
ctcggttttgtcgcgcgggcgcctcgctgggcgattgcttataaatttcccgcccaagaa
gaaataacgctcctgaacgatgttgaatttcaagtgggccgtaccggggctattacacct
gttgcgaagttagaacctgtatttgtggggggagtcaccgtcagcaatgccacattacac
aacgctgatgaaattgagcgcctaggcgtgaaaattggtgatagcgttattattcgtcga
gcaggcgatgttatcccacagattgtttctgtgttgttagacagacgctctgatacagtg
gtcgatattgttttcccgcagtactgcccggtgtgcaactctgacattgagcgtgttgaa
ggtgaagctgtcgcccgttgtacaggggggttagtgtgtcaagctcagcgcaaagaagca
ttaaagcactttgtctctcgcaaagcgttagacgtggatggtttaggcgaaaaagtgatt
gagcagcttgttgataaagagatggtgagcacgcccgcggacctcttccgtctaaaagca
gggcagctaacggtgttagagcgtatgggaccaaaatcagcacaaaatatcgttaatgca
ctgaatgccgccaaaatgaccacattaccccgttttttgtattcattgggcatacgtgaa
gtcggggaagcgacggcggcgaatcttgcgctccatttcgggtcattagacaaaattcgc
caagcgacccatgaagaactacttgaagttcaagatgttggagttatcgttgcgagtcat
atcacatctttttttgagcaagataaaaaccaacgggtgattaatgaattgatcgaactt
ggtatccagtggcctaatatcgaaaagccgagccaagatgcgattctccctttacttggt
aaagtggtggttttgacggggagcttgtcgaaactctctagaagtgatgcgaaagcggcg
ctacaagagcttggcgcaaaagtaacgggaagcgtctctaaaaacaccgatatactattt
gccggagaagcggccggttcaaaattagtaaaagcgcaagaactagggatcgaaattcgc
agcgaacaagatttgcttgagttaatgaaaagctaa
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