Variovorax paradoxus S110: Vapar_0402
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Entry
Vapar_0402 CDS
T00916
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
vap
Variovorax paradoxus S110
Pathway
vap03420
Nucleotide excision repair
vap03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vap00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Vapar_0402
03430 Mismatch repair
Vapar_0402
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vap03400
]
Vapar_0402
Enzymes [BR:
vap01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Vapar_0402
DNA repair and recombination proteins [BR:
vap03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Vapar_0402
MMR (mismatch excision repair)
Other MMR factors
Vapar_0402
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
AAA_12
NACHT
HHH_5
ResIII
Motif
Other DBs
NCBI-ProteinID:
ACS17065
UniProt:
C5CJ65
LinkDB
All DBs
Position
1:434761..436899
Genome browser
AA seq
712 aa
AA seq
DB search
MQTAALPAFSATGTPLTTGATQAERLAAALSALNDEQRAAVEHGVGTLTAGRDERPLLVI
AGAGSGKTSTLAHRVAHLIAGGVDLQRLLLLTFSRRAAQEMERRAGQVLARVLGLKSDKP
PALPWAGTFHGIGARLLREYAAHIGLNDHFTIHDRGDAEDLMGLVRHELGLSSSVNRFPR
KGTCLSIYSRCVNTRAPLAEVLAEAFPWCAEWEAELKRLFGAYVEAKQQQNVLDYDDLLL
YWAGMVAEPALAALVGERFDHVLVDEYQDTNLLQASILRALKPDGRGVTVVGDDAQSIYS
FRGATVRNILDFPSQFSQAARVVTLERNYRSTQPILDVSNRVIAQAAERHAKTLWTDKPS
AGRPQLVLVPDEAQQAVWVADKVLAHREGGLALKSQAVLFRAATHSAPLELELARRNIPF
VKYGGLKFLEASHVKDLLAVLRFAENPRGRMAGFRVTQLIPGIGPATGARLLDAMDQAAD
PAAAVREFVPPSAAREEWAVFAEAYAALCAPSLPWPADVELAVRWYLPHLDRLYDDPSGV
RRGDVEQLARLASGYGSRERFLTELTLDPPEATSDKPGPPSLDEDYLILSTIHSAKGQEW
NSVHVLNVVDGCLPADVAQGAHELEEERRLLYVAMTRARDHLHLLVPQRFYVTQQAVRGD
RHLYANRTRFISESDLAGFEQQTWPPPPARPPAVPPPAAVIDLRNRMRAAWS
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atgcagaccgctgcgctccccgctttttccgccacgggcactcccctcaccacgggtgcc
acccaggccgagcgcctcgccgcggcgctctcggcgctcaacgacgagcagcgcgccgcc
gtcgagcacggcgtcggcacgctgactgccgggcgcgacgagcggccgctgctggtgatc
gccggcgcgggctcgggcaagaccagcacgctggcgcaccgggtggcgcacctcatcgcc
ggcggcgtcgatctgcagcgcctgctgcttctgaccttctcgcgccgcgcggcgcaggaa
atggagcgccgcgcgggccaggtgctggcgcgcgtgctcgggctcaagtccgacaagccg
cccgcgctgccctgggccggcactttccacggcatcggcgcgcggctgctgcgcgagtac
gccgcgcacatcggcctgaacgaccacttcacgatccacgaccgcggcgacgccgaggac
ctgatgggcttggtgcgccacgagctcggcctgtcgtcgagcgtgaaccgctttccgcgc
aagggcacctgcctttcgatctattcgcgctgcgtcaacacgcgcgccccgctggccgag
gtgctggccgaggcctttccgtggtgcgccgaatgggaagccgaactcaagcgcctgttt
ggcgcctacgtcgaggccaagcagcagcagaacgtgctcgactacgacgacctgctgctc
tactgggccggcatggtggccgagcccgcgctggcggcgctggttggcgagcgcttcgac
cacgtgctggtcgacgaataccaggacaccaacctgctgcaggcctcgatcctgcgggcg
ctcaagcccgacggccgcggcgtgacggtggtgggcgacgatgcgcagtcgatctactcg
tttcgcggcgcaacggtgcgtaacatcctcgactttccgtcgcagttctcgcaggctgcg
cgcgtggtcacgctggagcgcaactaccgctcgacccagccgattctcgatgtctcgaac
cgggtcattgcacaggcggccgagcggcatgccaagacgctgtggaccgacaagccctcc
gccggccggccgcagctggtgctggtgcccgacgaggcgcagcaggctgtctgggtggcg
gacaaagtgctggcgcaccgcgagggcggcctcgcgctcaagtcgcaggcggtgctgttc
cgcgccgccacgcacagcgcgccgctcgagctcgaactggcgcgccgcaacatcccgttc
gtgaagtacggcggcctcaagtttctcgaggcctcgcatgtgaaggacctgctcgcggtg
ctgcgcttcgccgagaacccgcgcggccgcatggcgggtttccgcgtcacgcagctcatc
ccgggcatcgggccggccacgggcgcgcggctgctcgatgccatggaccaggccgccgat
ccggcggcggcggtgcgcgaattcgtgccgccctcggccgcccgcgaggagtgggcggtc
tttgccgaagcctatgccgcgctgtgcgcgccctcgctgccgtggccggccgatgtggaa
ctggcggtgcgctggtatttgccgcacctggaccggctctacgacgacccctccggcgtg
cggcgcggcgacgtcgagcagctggcgcggctggcctcgggctacggctcgcgcgagcgc
ttcctgaccgaactcacgctcgatccgcccgaagccaccagcgacaagccgggcccgccc
tcgctcgacgaggactacctcattctttcgaccatccactcggccaaggggcaggagtgg
aattcggtgcacgtgctcaacgtggtcgacggctgcctgccggccgacgtggcgcagggc
gcgcacgaactcgaggaggagcggcggctgctctacgtggcgatgacgcgggcgcgcgac
cacctgcatcttctggtgccgcagcgcttctacgtgacgcagcaggccgtgcgcggcgac
cggcacctgtatgccaaccgcacgcgcttcatttccgaatcggatcttgccggcttcgag
cagcagacctggccgccgccgccggcgcgcccgcccgcagtgccgccgccggccgcggtg
atcgacctgcgcaaccgcatgcgcgcggcctggagctga
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