KEGG   Variovorax paradoxus S110: Vapar_0402
Entry
Vapar_0402        CDS       T00916                                 
Name
(GenBank) UvrD/REP helicase
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
vap  Variovorax paradoxus S110
Pathway
vap03420  Nucleotide excision repair
vap03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:vap00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Vapar_0402
   03430 Mismatch repair
    Vapar_0402
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:vap03400]
    Vapar_0402
Enzymes [BR:vap01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Vapar_0402
DNA repair and recombination proteins [BR:vap03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Vapar_0402
   MMR (mismatch excision repair)
    Other MMR factors
     Vapar_0402
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 UvrD_C_2 AAA_30 Viral_helicase1 AAA_12 NACHT HHH_5 ResIII
Other DBs
NCBI-ProteinID: ACS17065
UniProt: C5CJ65
LinkDB
Position
1:434761..436899
AA seq 712 aa
MQTAALPAFSATGTPLTTGATQAERLAAALSALNDEQRAAVEHGVGTLTAGRDERPLLVI
AGAGSGKTSTLAHRVAHLIAGGVDLQRLLLLTFSRRAAQEMERRAGQVLARVLGLKSDKP
PALPWAGTFHGIGARLLREYAAHIGLNDHFTIHDRGDAEDLMGLVRHELGLSSSVNRFPR
KGTCLSIYSRCVNTRAPLAEVLAEAFPWCAEWEAELKRLFGAYVEAKQQQNVLDYDDLLL
YWAGMVAEPALAALVGERFDHVLVDEYQDTNLLQASILRALKPDGRGVTVVGDDAQSIYS
FRGATVRNILDFPSQFSQAARVVTLERNYRSTQPILDVSNRVIAQAAERHAKTLWTDKPS
AGRPQLVLVPDEAQQAVWVADKVLAHREGGLALKSQAVLFRAATHSAPLELELARRNIPF
VKYGGLKFLEASHVKDLLAVLRFAENPRGRMAGFRVTQLIPGIGPATGARLLDAMDQAAD
PAAAVREFVPPSAAREEWAVFAEAYAALCAPSLPWPADVELAVRWYLPHLDRLYDDPSGV
RRGDVEQLARLASGYGSRERFLTELTLDPPEATSDKPGPPSLDEDYLILSTIHSAKGQEW
NSVHVLNVVDGCLPADVAQGAHELEEERRLLYVAMTRARDHLHLLVPQRFYVTQQAVRGD
RHLYANRTRFISESDLAGFEQQTWPPPPARPPAVPPPAAVIDLRNRMRAAWS
NT seq 2139 nt   +upstreamnt  +downstreamnt
atgcagaccgctgcgctccccgctttttccgccacgggcactcccctcaccacgggtgcc
acccaggccgagcgcctcgccgcggcgctctcggcgctcaacgacgagcagcgcgccgcc
gtcgagcacggcgtcggcacgctgactgccgggcgcgacgagcggccgctgctggtgatc
gccggcgcgggctcgggcaagaccagcacgctggcgcaccgggtggcgcacctcatcgcc
ggcggcgtcgatctgcagcgcctgctgcttctgaccttctcgcgccgcgcggcgcaggaa
atggagcgccgcgcgggccaggtgctggcgcgcgtgctcgggctcaagtccgacaagccg
cccgcgctgccctgggccggcactttccacggcatcggcgcgcggctgctgcgcgagtac
gccgcgcacatcggcctgaacgaccacttcacgatccacgaccgcggcgacgccgaggac
ctgatgggcttggtgcgccacgagctcggcctgtcgtcgagcgtgaaccgctttccgcgc
aagggcacctgcctttcgatctattcgcgctgcgtcaacacgcgcgccccgctggccgag
gtgctggccgaggcctttccgtggtgcgccgaatgggaagccgaactcaagcgcctgttt
ggcgcctacgtcgaggccaagcagcagcagaacgtgctcgactacgacgacctgctgctc
tactgggccggcatggtggccgagcccgcgctggcggcgctggttggcgagcgcttcgac
cacgtgctggtcgacgaataccaggacaccaacctgctgcaggcctcgatcctgcgggcg
ctcaagcccgacggccgcggcgtgacggtggtgggcgacgatgcgcagtcgatctactcg
tttcgcggcgcaacggtgcgtaacatcctcgactttccgtcgcagttctcgcaggctgcg
cgcgtggtcacgctggagcgcaactaccgctcgacccagccgattctcgatgtctcgaac
cgggtcattgcacaggcggccgagcggcatgccaagacgctgtggaccgacaagccctcc
gccggccggccgcagctggtgctggtgcccgacgaggcgcagcaggctgtctgggtggcg
gacaaagtgctggcgcaccgcgagggcggcctcgcgctcaagtcgcaggcggtgctgttc
cgcgccgccacgcacagcgcgccgctcgagctcgaactggcgcgccgcaacatcccgttc
gtgaagtacggcggcctcaagtttctcgaggcctcgcatgtgaaggacctgctcgcggtg
ctgcgcttcgccgagaacccgcgcggccgcatggcgggtttccgcgtcacgcagctcatc
ccgggcatcgggccggccacgggcgcgcggctgctcgatgccatggaccaggccgccgat
ccggcggcggcggtgcgcgaattcgtgccgccctcggccgcccgcgaggagtgggcggtc
tttgccgaagcctatgccgcgctgtgcgcgccctcgctgccgtggccggccgatgtggaa
ctggcggtgcgctggtatttgccgcacctggaccggctctacgacgacccctccggcgtg
cggcgcggcgacgtcgagcagctggcgcggctggcctcgggctacggctcgcgcgagcgc
ttcctgaccgaactcacgctcgatccgcccgaagccaccagcgacaagccgggcccgccc
tcgctcgacgaggactacctcattctttcgaccatccactcggccaaggggcaggagtgg
aattcggtgcacgtgctcaacgtggtcgacggctgcctgccggccgacgtggcgcagggc
gcgcacgaactcgaggaggagcggcggctgctctacgtggcgatgacgcgggcgcgcgac
cacctgcatcttctggtgccgcagcgcttctacgtgacgcagcaggccgtgcgcggcgac
cggcacctgtatgccaaccgcacgcgcttcatttccgaatcggatcttgccggcttcgag
cagcagacctggccgccgccgccggcgcgcccgcccgcagtgccgccgccggccgcggtg
atcgacctgcgcaaccgcatgcgcgcggcctggagctga

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