Variovorax paradoxus S110: Vapar_1762
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Entry
Vapar_1762 CDS
T00916
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
vap
Variovorax paradoxus S110
Pathway
vap02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
vap00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Vapar_1762
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vap03021
]
Vapar_1762
Transcription machinery [BR:
vap03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Vapar_1762
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r2
Sigma70_r3
Sigma70_r4
Sigma70_r1_2
SPO22
GerE
MscS_porin
Motif
Other DBs
NCBI-ProteinID:
ACS18412
UniProt:
C5CUI4
LinkDB
All DBs
Position
1:complement(1896855..1899119)
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AA seq
754 aa
AA seq
DB search
MPATKSGAAASKSAAATKVKTVPTKSTSIDDPKKAAAKAVAAPAAKKVGRPPKAAGAAAP
ATGAKRGRKPKAGNEAPESDVDLSDIEEDLAGDEPATATTTEEKVKPLRMKISKAKERAL
MKEFGLDETVLSEEDLAKRRSRLKTLITLGKTRGYLTHGEISDHLPDKLVDAETMEVVVT
MLNDMGVAVYEQTPDAETLLLNNTAPTATTVEEAEEEAEAALSTVDSEFGRTTDPVRMYM
REMGTVELLTREGEIEIAKRIEGGLMAMMEAISASPATIAEILRLAADIREGKVVISTVV
DGFSNPNEADDYVAEEDFDEFDEEDDDDGKGGSKALTKKLEELKRDALERFDRIASMFEK
VHKIYDKEGYGTPAYEKAQQALSDELMTIRFTAKTIEKLCDLVRTQVDDVRKKERELRRI
IVDKCGFPQDEFIRDFSGYDKNGNRVPSNLLNQKWVEKQAAAGKPWSAVLARNIPPVQEL
QQKLADIQSRVVVPLTQLKEINKRMNEGESSSRDAKKEMIEANLRLVISIAKKYTNRGLQ
FLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETI
NKMNRISRQHLQEFGFEPDAGILAAKMEIPEDKIRKIMKIAKEPISMETPIGDDDDSHLG
DFIEDSSNTAPIEAAMQAGLRDVVKDILDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQF
DVTRERIRQIEAKALRKLKHPSRSDKLRSFIDTL
NT seq
2265 nt
NT seq
+upstream
nt +downstream
nt
atgccggcaactaagtcgggtgccgccgcttccaaatcggcagccgcaacgaaagtgaaa
accgtgcccacgaaatcgacctccatcgacgatccgaaaaaagctgccgccaaggcagtt
gccgcccccgccgccaagaaagtaggccgcccgcccaaggccgccggcgctgccgcgccc
gccaccggcgccaagcgcggccgcaagcccaaggccggcaacgaagcgcccgaaagcgac
gtcgacctgtcggacatcgaggaagacctggccggcgacgagcccgcaaccgccacgacc
accgaggaaaaggtcaagccgctgcgcatgaagatcagcaaggcgaaggaacgcgccttg
atgaaggagttcggcctggacgagaccgtgctctccgaggaagacctggccaagcgccgc
tcgcgcctgaagacgctgatcacgctcggcaagacccgcggctacctcacgcacggcgaa
atctccgaccacctgcccgacaagctggtcgacgccgagaccatggaagtcgtggtcacc
atgctcaacgacatgggcgtggcggtgtacgagcaaacgcccgacgccgagaccctgctg
ctgaacaacaccgcgcccaccgccaccacggtggaagaagccgaggaagaagccgaagcg
gccctgtccacggtggacagcgaattcggccgcacgaccgacccggtgcgcatgtacatg
cgcgaaatgggcacggtcgagctgctcacgcgcgaaggcgaaatcgaaatcgccaagcgc
atcgaaggcggcctgatggccatgatggaagccatctcggcctcccccgccaccatcgcc
gagatcctgcgcctggccgccgacatccgtgaaggcaaggtcgtcatctccaccgtggtg
gacggcttctcgaaccccaacgaagccgacgactacgtggccgaggaagacttcgacgag
ttcgacgaggaagacgacgacgacggcaagggcggctccaaggccctcaccaagaagctc
gaggaactcaagcgcgatgcgctcgagcgcttcgaccgcattgcctcgatgttcgagaag
gtccacaagatctacgacaaggaaggctacggcacgcccgcgtacgagaaggcccagcag
gccctgtcggacgagctcatgaccatccgcttcacggccaagaccatcgagaagctgtgc
gacctggttcgcacgcaggtggacgacgtgcgcaagaaggagcgcgagctgcgccgcatc
atcgtggacaagtgcggcttcccgcaggacgagttcatccgcgatttctcgggctacgac
aagaacggcaaccgcgtgccctcgaacctgctgaaccagaagtgggtcgagaagcaggcc
gcggccggcaagccctggagcgccgtgctcgcgcgcaacattccgccggtgcaggaactg
cagcagaagctcgccgacatccagtcgcgcgtggtggtgccgctcacccagctcaaggaa
atcaacaagcgcatgaacgagggcgaatcgtcctcgcgcgatgccaagaaggaaatgatc
gaggccaacctgcgcctcgtgatctccatcgccaagaagtacaccaaccgcggcctgcag
ttcctggacctgatccaggaaggcaacatcggcctgatgaaggcggtcgacaagttcgaa
taccgccgcggctacaagttctcgacctacgccacgtggtggatccgccaggccatcacg
cgctcgatcgcggaccaggcgcgcaccatccgcatcccggtgcacatgatcgagacgatc
aacaagatgaaccgcatctcgcgccagcatctgcaggagttcggcttcgagcccgacgcc
ggcatcctggctgccaagatggagatcccggaagacaagatccgcaagatcatgaagatc
gcgaaggagccgatctcgatggaaacccccatcggcgacgacgacgattcgcacctgggc
gacttcatcgaggacagcagcaacacggccccgatcgaggccgcgatgcaggcgggcctg
cgcgacgtggtcaaggacatcctcgacagcctcacgccgcgcgaagccaaggtgctgcgc
atgcgcttcggcatcgagatgtcgacggaccacacgctggaagaagtcggcaagcagttc
gacgtgacgcgcgagcgcatccgccagatcgaggcgaaggccctgcgcaagctcaagcat
ccctcgcgttcggacaaactgcgcagcttcatcgatactctgtaa
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