KEGG   Variovorax paradoxus S110: Vapar_2505
Entry
Vapar_2505        CDS       T00916                                 
Name
(GenBank) squalene synthase HpnD
  KO
K02291  15-cis-phytoene synthase [EC:2.5.1.32]
Organism
vap  Variovorax paradoxus S110
Pathway
vap00906  Carotenoid biosynthesis
vap01100  Metabolic pathways
vap01110  Biosynthesis of secondary metabolites
Brite
KEGG Orthology (KO) [BR:vap00001]
 09100 Metabolism
  09109 Metabolism of terpenoids and polyketides
   00906 Carotenoid biosynthesis
    Vapar_2505
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01006 Prenyltransferases [BR:vap01006]
    Vapar_2505
Enzymes [BR:vap01000]
 2. Transferases
  2.5  Transferring alkyl or aryl groups, other than methyl groups
   2.5.1  Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
    2.5.1.32  15-cis-phytoene synthase
     Vapar_2505
Prenyltransferases [BR:vap01006]
 Terpene biosynthesis
  Squalene/phytoene synthase
   Vapar_2505
SSDB
Motif
Pfam: SQS_PSY
Other DBs
NCBI-ProteinID: ACS19131
UniProt: C5CJS8
LinkDB
Position
1:complement(2639254..2640093)
AA seq 279 aa
MTPEQYVQDKAAASGSSFYYAFLFLPKPRRAAITAFYAFCREIDDVVDEVSDPGVAATKL
AWWRTEVAQSFAGPPRHPVMQALVPHAATYGIEPAQLNEVIDGCQMDLEQTRYLDFPGLA
RYCHLVAGVVGEVAARIFGQTDPQTTAYAHKLGLALQLTNIIRDVGEDALRGRIYLPVNE
LQKFDVKAHEILNRVHSERFVALMKFQAERAHAAYDEALALLPAPDRRAQKPGLMMASIY
RTLLREIERDNFQVLNQRVSLTPVRKFWLAWKVQALGRI
NT seq 840 nt   +upstreamnt  +downstreamnt
atgactcccgagcaatacgtacaggacaaggccgccgcctcgggcagcagtttctattac
gcctttctgttccttcccaagccgcggcgcgccgcgatcacggccttctatgccttctgc
cgcgagatcgacgacgtggtcgacgaggtcagcgaccccggcgtggccgcgaccaagctc
gcctggtggcgcaccgaggtggcgcagtcctttgcgggaccgccgcgccaccccgtgatg
caggcgctggtgccgcatgccgccacctacggcatcgagcccgcccagctcaacgaggtg
atcgacggctgccagatggacctcgagcagacccgctacctcgactttcccggcctcgcg
cgctactgccacctggtggccggcgtggtgggcgaagtcgctgcgcgcatcttcggccag
accgacccgcagaccaccgcctatgcgcacaagctcgggctggcgctgcagctcaccaac
atcattcgcgacgttggcgaggacgcgctgcgcggccgcatctacctgcccgtgaacgaa
ctgcagaaattcgacgtcaaggcgcacgagatcctgaaccgcgtgcattcggagcgcttc
gtcgcgctcatgaagttccaggccgagcgcgcgcatgcggcatacgacgaagccctcgcc
ctgctgcccgcccccgaccgccgcgcccagaagcccggcctcatgatggccagcatctac
cgcacgctgctgcgcgagatcgagcgcgacaacttccaggtgctgaaccagcgcgtgagc
ctgacgccggtgcgcaagttctggctggcgtggaaggttcaagccttggggcgcatttga

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