Variovorax paradoxus S110: Vapar_2950 Help Entry Vapar_2950        CDS       T00916                                  Name (GenBank) DNA ligase, NAD-dependent   KO K01972   DNA ligase (NAD+) [EC:6.5.1.2] Organism vap  Variovorax paradoxus S110 Pathway vap03030   DNA replication vap03410   Base excision repair vap03420   Nucleotide excision repair vap03430   Mismatch repair Brite KEGG Orthology (KO) [BR:vap00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     Vapar_2950    03410 Base excision repair     Vapar_2950    03420 Nucleotide excision repair     Vapar_2950    03430 Mismatch repair     Vapar_2950  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:vap03032]     Vapar_2950    03400 DNA repair and recombination proteins [BR:vap03400]     Vapar_2950 Enzymes [BR:vap01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.2  DNA ligase (NAD+)      Vapar_2950 DNA replication proteins [BR:vap03032]  Prokaryotic type   DNA Replication Elongation Factors    Elongation factors (bacterial)     Other elongation factors      Vapar_2950 DNA repair and recombination proteins [BR:vap03400]  Prokaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     DNA ligase      Vapar_2950    NER (nucleotide excision repair)     GGR (global genome repair) factors      Vapar_2950    MMR (mismatch excision repair)     DNA ligase      Vapar_2950   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     SHDIR (short-homology-dependent illegitimate recombination)      RecET pathway       Vapar_2950 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT HHH BRCT_2 5_3_exonuc Motif Other DBs NCBI-ProteinID:  ACS19570 UniProt:  C5CNU3 LinkDB All DBs Position 1:complement(3107504..3109588) Genome browser AA seq 694 aa AA seqDB search MTTRDEAAREAAALSEQLHKHAHLYYVLDAPELPDAEYDRLFQRLQALEAEYPELRTPDS PTQRVGGKVLEGFVKVRHKVPMLSIRTETDISPGGASAFDARVRKELGLAEDGPQVEYVC ELKFDGLAMNLRYENGVLVQAATRGDGEVGEEVTQNIRTVREIPLRLNGKAPPVVEVRGE IYMKRADFEALNERQREKIAAGQKNEKVFVNPRNAAAGAVRQLDPAIAAARPLSFFAYGL GEVTPASEGGPEFPTQFDWLQQFHAWGFPVATQTARATGAIELIAFHENIGRQRDALPYD IDGVVYKVDSIELQRRLGFVSREPRWAVAHKYPAQEQITEVLGIEVQVGRTGKLTPVAKL APVFVGGVTVTNATLHNEDEARRKDVRVGDKVIVRRAGDVIPEVVGVVPESLARPEGERG LLFTMPHQCPVCGSEALREEGEVDYRCTGGLFCAAQRKEAILHFAARRAVDIDGLGDKLV EQLVDANLIRTLPDLYKLGFATLAGLDRMADKSAKNLVDALEASKKTTLPRFLFGLGIRH VGESTAKDLSKHFGKLDAIMDASEEQLLEVNDVGPVVAQSLRTFFDQPHNREVVEQLRAC GLTWEEGEPAARAPKPLAGLTFVITGTLPTLSRDEAKDKLEAAGAKVAGSVSKKTSYLVA GEEAGSKLDKAREIGVEVIDEARMLELLAGGAPG NT seq 2085 nt NT seq  +upstreamnt  +downstreamnt atgaccacgcgcgacgaagcggcacgcgaagccgccgcactgagcgaacagctccacaag cacgcccatctctactacgtgctcgatgcgcccgagctgcccgacgccgagtacgaccgg ctgttccagcggctgcaggcgctggaagccgaataccccgaactgcgcacgcccgattcg cccacgcagcgcgtcggcggcaaggtgctcgaaggcttcgtgaaggtgcgccacaaggtg ccgatgctgtcgatccgcaccgagaccgacatctcgcccggcggcgccagcgccttcgat gcccgcgtgcgcaaggaactgggcctggccgaggacgggccgcaggtcgagtacgtctgc gaactcaagttcgacggcctggccatgaacctgcgctatgagaacggcgtgctggtgcag gccgcgacgcgcggcgatggcgaggtcggcgaggaggtcacgcagaacatccgcacggtg cgcgagattccgctgcggctcaatggcaaggcgccgcccgtggtcgaggtgcgcggcgag atctacatgaagcgcgccgacttcgaggcgctcaacgagcgccagcgcgagaagatcgcg gccgggcagaagaacgagaaggtcttcgtcaatccgcgcaatgccgcggccggcgcggtg cgccagctcgatccggccattgcggcggcgcggccgctgagcttttttgcctacggcctc ggcgaggtcacgccggccagcgaaggcgggccggaatttccgacccagttcgactggctg cagcagttccacgcctggggctttccggtggccacgcagaccgcacgcgcgaccggtgcc atcgaactgatcgccttccacgagaacatcgggcgccagcgcgatgccttgccctacgac atcgacggcgtggtctacaaggtcgacagcatcgagctgcagcggcggctgggcttcgtc tcgcgcgaaccgcgctgggccgtggcacacaagtacccggcgcaggagcagatcaccgag gtgctgggcatcgaggtgcaggtcgggcgtaccggcaagctcacgccggtggccaagctc gcgccggtcttcgtgggcggcgtgaccgtcaccaacgccacgctgcacaacgaggacgag gcgcgccgcaaggacgtgcgcgtgggcgacaaggtgatcgtgcggcgggccggcgacgtg atccccgaagtggtcggcgtggtgcccgaaagcctcgccaggcccgagggcgagcgaggc ctgctcttcaccatgccgcaccagtgcccggtgtgcggatcggaagcgctgcgcgaagag ggcgaagtcgactaccgctgcaccggcggcctgttctgcgcggcccagcgcaaggaagcc atcctgcactttgcggcgcgccgcgcggtcgacatcgacgggctcggcgacaagctggtc gagcagctggtcgatgccaacctgatccgcaccttgcccgacctctacaagctcggattc gccacgctggcggggctggaccgcatggccgacaagtcggccaagaacctcgtcgatgcg ctcgaggcgtcgaagaagaccacgctgccgcgcttcctgttcggcctgggcatacggcac gtgggcgagagcacggccaaggacctgtccaagcacttcggcaagctcgacgcgatcatg gatgcgagcgaggagcagttgctggaagtcaacgacgtgggcccggtcgtcgcgcaaagc ctgcgcaccttcttcgaccagccgcacaaccgcgaggtggtcgagcagctgcgcgcctgc gggctgacctgggaggagggcgaacccgccgcccgggcgcccaagccgctggcggggctg accttcgtgattaccggcacccttcctacgctgagccgcgacgaagccaaggacaaactg gaagcagccggcgccaaggtggcgggttccgtcagcaagaagaccagctacctggtggcc ggcgaagaggccggcagcaagctggacaaggcgcgcgagatcggcgtggaggtgatcgac gaggcgcgtatgctggagctgctcgccggcggtgcgccgggttga

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