Variovorax paradoxus S110: Vapar_3889
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Entry
Vapar_3889 CDS
T00916
Name
(GenBank) transcriptional regulator, LysR family
KO
K18297
LysR family transcriptional regulator, mexEF-oprN operon transcriptional activator
Organism
vap
Variovorax paradoxus S110
Module
vap_M00745
Imipenem resistance, repression of porin OprD
Brite
KEGG Orthology (KO) [BR:
vap00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vap03000
]
Vapar_3889
09183 Protein families: signaling and cellular processes
01504 Antimicrobial resistance genes [BR:
vap01504
]
Vapar_3889
Transcription factors [BR:
vap03000
]
Prokaryotic type
Helix-turn-helix
LysR family
Vapar_3889
Antimicrobial resistance genes [BR:
vap01504
]
Gene sets
beta-Lactam resistance modules
Imipenem resistance, repression of porin OprD [MD:
M00745
]
Vapar_3889
Multipdrug resistance modules
Multidrug resistance, efflux pump MexEF-OprN [MD:
M00641
]
Vapar_3889
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HTH_1
LysR_substrate
HTH_30
HTH_5
Motif
Other DBs
NCBI-ProteinID:
ACS20503
UniProt:
C5CV67
LinkDB
All DBs
Position
1:complement(4120644..4121546)
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AA seq
300 aa
AA seq
DB search
MKPIELSRIDLNLLTVLAALMRERHVSRAAQRLHLGQPAVSHALARLRELTGDPLLVRQG
RVMEPTERALALMQGLGPALEQIEATFRAQADFEPARAAPVFRIGLTDDLQIAMLPRLLR
ALSVEAPRARLVTLTVCYRNAARYLDEGQVSAVMTFLKDLPAGAKIRKVRTARFALLRAD
TAAARLTLDDYCRRRHVLVTYAGDLCGTVDETLNELGRQREVAFSVPQFGSLPAVLAGTE
LLATVPEHVALALSAQGGLRCEALPFESPSYQIKLAWRAVTDKDAAETWLRRAMLRAFND
NT seq
903 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccgatcgaactcagccggattgacctcaacctgctcaccgtgctggcggccctc
atgcgcgagcggcacgtcagccgggctgcgcagcggctgcacctgggacagccggccgtg
agccacgcgctggcgcggctgcgcgagctcacgggcgatccgctgctggtgcgccagggg
cgggtgatggagccgaccgaacgggcactggcgctgatgcagggactgggtccggcgctc
gagcagatcgaggccacgttccgcgcgcaggcggatttcgagcccgcgcgcgccgcgccg
gtgtttcgcatcgggctcaccgacgacctgcagatcgcgatgctgccgcggctgcttcgc
gcgctcagcgtggaagcaccccgcgccaggctggtgaccctgacggtctgctaccgcaac
gccgcgcgctatctcgacgaagggcaggtcagcgcggtcatgaccttcctgaaggatctg
ccggcgggtgccaagatacgcaaggtccgcacggcacgctttgcgctgctgcgcgccgac
accgcggccgcaagactgacgctcgacgactattgccggcggcggcacgtgctcgtgacc
tacgcgggcgacctgtgcggcaccgtcgacgagacactgaacgaactcggccggcagcgc
gaggtggccttctcggtgccgcagttcggcagcctgccggccgtgctcgcgggcaccgag
ctcctggccacggtgccggagcatgtggcgctggcgctgtcggcgcagggcgggcttcgc
tgcgaggcgctgccgttcgagagtccgagctaccagatcaagctggcctggcgcgccgtg
accgacaaggacgcggcggagacatggctgcgcagggcgatgctgcgggcgttcaacgac
tga
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