Vigna angularis (adzuki bean): 108331724
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Entry
108331724 CDS
T04660
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 1
KO
K15172
transcription elongation factor SPT5
Organism
var
Vigna angularis (adzuki bean)
Pathway
var03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
var00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
108331724
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
var03021
]
108331724
03019 Messenger RNA biogenesis [BR:
var03019
]
108331724
Transcription machinery [BR:
var03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
108331724
RNA polymerase I system
108331724
Messenger RNA biogenesis [BR:
var03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
108331724
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spt5-NGN
KOW
Spt5_N
DUF4438
Motif
Other DBs
NCBI-GeneID:
108331724
NCBI-ProteinID:
XP_017422107
UniProt:
A0A0L9UFY8
LinkDB
All DBs
Position
4:complement(24850770..24857084)
Genome browser
AA seq
1032 aa
AA seq
DB search
MSHRGMDRDDDDDDDYMEDEQVADFDEEDDRRGRGGGSRKRRRSGFIDDDAEEVDEDEEE
EDDDDEDFDARGGRRRQYKKVSASNFFDEEAVVDSDEEEEEEEGEDDFIVEGGADLPEED
DGRRMRNRRMLPHHQEDHEDLEAVARSIQERYGRRLTDYDEETTDVEQQALLPSVRDPKL
WMVKCAIGRERETAVCLMQKYIDRGSELQIRSAIALDHLKNYIYVEADKEAHVREACKGL
RNIFGQKITLVPIREMTDVLSVESKAIDLARDTWVRMKIGTYKGDLAKVVDVDNVRQRVT
VKLIPRIDLQALANKLEGREVVKKKAFVPPPRFMNVDEARELHIRVEHRRDPYGERFDAI
GGMMFKDGFLYKTVSIKSISAQNIKPTFDELEKFRKPGESGDGDVSSLSTLFANRKKGHF
MKGDAIIVVKGDLKNLKGKVEKVDEDNVHIRPEIEGLPKTIAINEKELCKYFEPGNHVKV
VSGAQEGATGMVVKVEQHVLILISDTTKEHIRVFADDVVESSEVTTGVTRIGDYELRDLV
LLDNMSFGVIIRVESEAFQVLKGIPDRHEVVLVKLREIKCKIDKKISVQDRYKNTVSSKD
VVRIVDGSSKGKQGPVEHIYRGILFIFDRHHLEHAGFICAKAQSCVVVGGSRSSGDRNGD
AYSRFPTLRSPSRIPPSPRRFPRGGPMDSGGRHRGGRGHDGLAGTTVKVRQGPYKGYRGR
VIDDKGTSVRVELESQMKVVTVDRNHISDNVAITPYRDTSRYGMGSETPMHPSRTPLHPY
MTPMRDPGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGASPQYQPGSPPSR
PYEAPTPGAGWASTPGGNYSEAGTPRDSSAYANAPSPYLPSTPGQPMTPSSASYLPGTPG
GQPMTPGTGGMDMMSPVLGGDNEGPWFIPDILVNVHRAGDESVGVIREVLPDGSYKVALG
SSGNGETITALPNEMEAVVPRKSDKIKIMGGALRGATGKLIGVDGTDGIVKVDDTLDVKI
LDLVILAKLAQP
NT seq
3099 nt
NT seq
+upstream
nt +downstream
nt
atgagtcaccggggaatggaccgcgacgacgacgacgatgacgattatatggaagacgag
caggtcgcagacttcgacgaggaggatgaccgccgggggcgcggtggcggcagtaggaag
cgcagaagatctggttttattgacgatgacgctgaggaggtagatgaggatgaggaggag
gaggatgacgatgatgaggatttcgatgcccgagggggtcgcaggcgccagtacaaaaag
gtttccgcttctaatttttttgacgaggaggccgtggtggatagcgacgaggaagaggaa
gaggaagagggcgaggacgacttcattgttgagggtggagccgatctaccagaagaagat
gatgggaggaggatgcggaataggcgaatgctgccacatcaccaagaagatcatgaagat
cttgaagctgtggccagaagcatccaggaacgttatggaaggcgcctaacggattatgat
gaagaaacaacagatgtagaacaacaagctcttttgccatctgtgagagatccaaagctt
tggatggtcaaatgtgcaattggacgcgaaagagaaacagccgtttgcctcatgcaaaag
tacatagatagaggatctgaattgcaaataagatcagctattgctcttgatcatctaaaa
aactatatatacgtggaagcagataaagaagctcatgtcagagaggcttgtaaaggtcta
cgcaatatatttggccaaaaaataactcttgtcccaatcagagaaatgactgatgttctg
tcagttgaaagcaaagcaattgatcttgctagagatacttgggttagaatgaagatcggg
acatataaaggggaccttgccaaagtagtggatgttgataatgtgaggcagagggttact
gtcaaattaattccaaggatagacctacaagctcttgcaaataaattggaaggtagggag
gttgtgaaaaagaaggcttttgttcctccccctcgatttatgaatgttgatgaagcaagg
gaactgcatatccgtgtggagcatcgacgagacccatatggtgaacgttttgatgcaatt
gggggcatgatgttcaaagatggtttcttatacaaaactgtttcaataaaatccatcagt
gctcagaacatcaaacctacttttgatgagttggaaaaattccgtaaaccgggtgagagt
ggagatggtgatgtgtctagtctttcaactttgtttgcgaacaggaagaaaggacacttt
atgaaaggtgacgccatcattgttgtaaagggtgatttaaagaatcttaaggggaaggtg
gagaaggtggatgaagataacgtccatataaggccagaaatagagggacttcccaaaact
attgctataaatgaaaaggagctttgtaaatattttgagcctggaaaccacgttaaggtt
gtttctggtgctcaagaaggggctacgggcatggttgtgaaggtcgagcagcatgtcttg
attttgatatccgatacaacaaaagagcatattcgtgtatttgcagatgatgttgtagaa
agttcagaagtaacgactggagttactagaattggggactatgaactccgtgatcttgta
ttgcttgataatatgagctttggtgtcataatacgtgtagaaagtgaggcatttcaggtt
ctaaaggggattcctgacagacacgaagttgtgctggttaaattaagagagatcaaatgt
aagatagataagaaaataagtgtgcaagataggtataagaatacagtttcatcaaaggat
gttgtccggattgttgatggttccagtaaagggaaacaaggtcctgtggaacacatatat
agaggaatcttgttcatctttgatcgccatcatcttgaacatgcaggctttatatgtgct
aaggcccaatcatgtgtggtagtggggggttcacgctccagtggtgacagaaatggtgat
gcctactcaagatttcccactcttagaagcccaagtcgtattccaccatccccaaggagg
tttcctcgtggagggccaatggattctggagggagacataggggtgggagagggcatgac
ggtttggcaggtacaactgttaaagtgcgtcagggtccatataaaggttatcgtggtcgt
gttatagatgataaaggcacttcagttcgtgttgagcttgaatctcaaatgaaggttgta
acagttgaccgcaaccatatatctgacaatgttgctataactccatatcgtgatacatct
cgctatggaatgggaagtgaaaccccaatgcatccttctcggactcccctacacccatat
atgactccaatgagagatcctggagcaacacctattcatgatggaatgaggacacctatg
cgtgaccgagcatggaatccatatactccaatgagtcctccaagggacaactgggaagat
ggaaatccaggctcttggggagcaagtccacagtatcagcctggaagccctccatcacga
ccatatgaagccccgactcctggtgctggttgggctagcacacctggtggaaattatagt
gaagctggaacacctcgggacagttctgcctatgctaatgctccaagcccgtatttacca
tcaacacctgggcagcctatgacaccaagttcagcatcttatcttccaggcactcctgga
ggacagcccatgactccaggcacaggtggtatggacatgatgtctccagttttaggtggg
gacaatgaaggcccatggtttataccagatatattagtcaatgtacacagggccggagac
gaatctgttggagttataagagaggttcttccggatggctcgtacaaggtagctcttgga
tctagtggtaatggtgaaacgattaccgcccttccgaatgaaatggaggctgtggtacca
agaaaatcagacaaaataaagattatgggtggggcattacgtggtgccactggcaagttg
attggtgtagatggtactgatggaattgtaaaggtagatgacacgttggatgtcaagatt
ttagacttggttattttggcaaaattagctcaaccatga
DBGET
integrated database retrieval system
