Vibrio campbellii ATCC BAA-1116: M892_05475
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Entry
M892_05475 CDS
T02837
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
vca
Vibrio campbellii ATCC BAA-1116
Pathway
vca03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
M892_05475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vca03400
]
M892_05475
Enzymes [BR:
vca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
M892_05475
DNA repair and recombination proteins [BR:
vca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
M892_05475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
Glyco_tran_WecG
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AGU94242
LinkDB
All DBs
Position
I:1193768..1197229
Genome browser
AA seq
1153 aa
AA seq
DB search
MTKATILSVTNPSERGDKKQLGNLPGAALAMAIAELAKQHSSHSLLVVPDPQIALKLQAE
IEQFTDQPVSLFPDWETLPYDNFSPHQEIISDRIARLYQLPTQSNGVTIVPVSTVLQRQS
PRDFLLQHTLMVKTGDQFSLDKLRVQLENSGYRHVDQVFGPGEYASRGSILDLFPMGSSD
PYRIDFFDDEIDTIRTFDPENQRSIEDIQQIQLLPAHEFPTTKAAIEDFRTRWRSQFEAR
REPESIYMQVTKGTWPAGIEYWQPLFFDHTETLFDYLPEDSQLITYGDIEASVDTFLNDV
DYRYDQKKIDPMRPLLAPHELWLKKDELFTHFKQLPQAQLNLEKIVKRAGRQNLAVQSLA
ELGVQQQNKEPLARLRQFSEQFTGKIIFSVESEGRREALTELLQGIKVRPVVHGSLYQAL
DSDDRFSLILGAAEHGFIHEDLNFALICESDLLGDRVIQRRRKDKKAVNSDTVIRHLAEL
KPGQPVVHIDHGIGRYIGLQTLEAGGMKTEYVTLEYQNDAKLYVPVSSLNLISRYSGGAE
ESAPLHKLGGEAWAKARRKAAEKVRDVAAELLDVYAKRELKPGYKFELDRGQYATFKATF
PFEETDDQSTAINAVLSDMCQAKAMDRLVCGDVGFGKTEVAMRAAFVATDNSKQVAVLVP
TTLLAQQHFENFRDRFANLPIRVEVLSRFKSAKEQKVILQDVADGKVDIVVGTHKLLSSD
IKFKDLGLLIVDEEHRFGVRQKEKVKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIA
TPPARRLAIKTFVRQREDSVVREAALREIMRGGQVYFLHNQVETIEKTAEDLQKLIPEAR
VTVAHGQMRERELERIMNDFYHQRFNLLVCTTIIETGIDVPTANTIIMDRADNLGLAQLH
QLRGRVGRSHHQAYAYLLTPHPKAITKDAIKRLDAIASLEDLGAGFTLATHDLEIRGAGE
LLGDEQSGQIQSVGFTLYMEMLEQAVEALKEGKEPPLDDLLREQTEIEMRIPALLPDDYI
PDVNTRLSMYKRIASVTDNEGLSELKVELIDRFGILPDATKNLLSVSELKIGAGSLKAKK
IEAHDKGGFIEFYPDADINPAYLVKLLQSQPQKFAMEGPTKFKFSVPLTDRRKRIQFVQD
LLNDFKKNLLPTS
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaagcaacaattctttccgtcacgaatccatctgagcgtggcgacaaaaaacaa
cttggcaacctacctggtgcagcattggcaatggcaatcgctgagctagccaaacagcat
tcaagtcactctttgcttgtagtgccagatccacaaatcgcactcaagctacaagcagaa
attgaacagtttaccgatcagccagtcagcctatttccagattgggaaacactgccttac
gacaacttttctccgcaccaagagatcatctcagaccgtattgcacgcttataccaattg
ccgactcaaagtaatggcgtaacgattgtgccagtaagtacggtgttgcagcgtcagtct
ccacgtgatttcttattgcaacacactttgatggtgaaaacgggcgaccaattctcacta
gataagcttcgtgtgcagctagagaactcaggctaccgtcacgttgatcaagtgtttggt
ccgggtgaatacgcgagccgaggctcgatccttgacctgttcccaatgggcagctcagat
ccataccgcattgatttcttcgatgacgagatcgacaccatccgtaccttcgatccagaa
aaccaacgttcgatcgaagacattcagcaaatccaattgctaccagcgcatgagttcccg
acaaccaaagcggcaattgaagatttccgtactcgctggcgttctcagtttgaagctcgc
cgcgagcccgagtcgatttacatgcaagtcaccaaaggtacttggccggcaggtatcgag
tactggcaaccactgttcttcgaccataccgaaacactgtttgactacctgccagaagac
tctcaactgatcacatacggtgatattgaagcctcagtggataccttcttgaatgacgta
gattaccgctacgatcaaaagaaaatcgatccgatgcgtccgttgttagcaccacatgaa
ttgtggttgaaaaaagacgaactatttactcacttcaaacaactgccacaggcgcagttg
aacttagagaaaatcgttaagcgtgctggtcgccagaatctcgcagttcaatctctagcc
gagcttggtgttcaacagcagaacaaagagccgttagcgcgtttacgtcaattcagtgaa
caattcacgggtaaaatcattttctctgtggaatcggaaggccgccgcgaagcgctaaca
gaactgctgcaaggcattaaagttcgccctgtcgtgcatggttcactctaccaagcactg
gattctgacgatcgtttcagtttgatcttaggtgcagcagaacatggctttattcacgag
gacctgaacttcgccctgatctgtgaaagcgatctgctgggcgatcgtgtgattcaacgt
cgccgcaaagacaagaaagcggtaaacagtgacaccgttattcgtcacctagccgaactt
aagccgggtcagcctgttgtgcacatcgatcacggtattggccgctacattggcctacag
actcttgaagcgggcggcatgaagacggaatacgtaacccttgagtatcaaaatgacgcc
aagctttacgttcccgtctcttcattaaacctaatcagccgctactctggtggtgctgaa
gagagcgcgccgctgcataaactgggtggtgaagcatgggcgaaggctcgtcgtaaagcc
gctgagaaagtacgcgacgtcgcggcagagctacttgatgtttacgctaagcgtgaattg
aaaccgggctacaagtttgagctggaccgtggtcaatacgccacatttaaagccaccttc
ccgtttgaagaaaccgatgatcagtcaactgccattaatgcggttctatccgatatgtgc
caagcaaaagccatggaccgcctcgtatgcggtgatgtgggctttggtaaaacagaagtg
gcgatgcgcgctgcgtttgttgccacagacaatagtaagcaggtcgcggtattggtgcca
accaccctacttgctcagcagcactttgaaaacttccgtgaccgctttgccaacttacca
attcgcgtagaagtactttcacgttttaaatcggcaaaagagcaaaaagtcattcttcaa
gacgtcgccgatggcaaagtggatattgtcgtaggtactcataaactactttcaagtgac
atcaaattcaaagatcttggcttattgattgtcgatgaagaacaccgcttcggtgtacgc
caaaaagaaaaagtgaaagcgatgcgtgctgatgtcgacatcctaacgctgaccgcaacc
cctattcctcgtacattgaatatggcaatgagtggcatgcgcgacttgtcgatcatcgca
actccgccagcacgccgtttggcaatcaaaacatttgtgcgtcaacgtgaagactccgtg
gttcgtgaagcagcactgcgtgaaatcatgcgtggtggtcaggtttacttcctgcacaac
caagtcgaaaccatcgagaaaacagccgaagatctgcaaaagctcatcccagaagcgcgt
gtgaccgttgcccacggccagatgcgtgagcgcgagctagaacgcatcatgaatgacttc
tatcatcagcgttttaaccttttggtgtgtaccaccatcatagaaacaggtatcgacgtt
ccgaccgccaacaccattatcatggatcgagctgataacctcggtcttgcacagctacac
caattacgtggccgcgttggtcgttcacaccatcaagcttacgcttacttactgacgcca
catccaaaagccatcaccaaagatgcgattaagcgtcttgatgcgatcgcttcgctggaa
gatctcggtgcaggtttcacactggccacgcacgatcttgagattcgtggtgcgggtgag
ctattaggtgacgaacaaagtggtcaaattcaatctgttggctttacactgtatatggag
atgcttgaacaagcggttgaagcattgaaagaaggtaaagagccaccattggatgatctg
cttcgcgaacaaactgaaattgaaatgcgtatcccagcgctattgccggatgactacatt
ccagatgtgaacacacgtctatcgatgtacaaacgcattgcaagcgtgacagataacgaa
ggtttgtctgaactgaaagtggaactgattgaccgatttggtattttaccagatgcaacc
aagaacctcctatctgtctcagagttgaaaattggggcaggaagtctcaaagcgaagaaa
attgaggcgcatgataagggcggattcattgagttttaccctgatgctgacattaatcca
gcgtatttggttaaactcctgcaatcacagccgcaaaaatttgcaatggaaggtccaact
aagttcaagtttagcgtaccattgacggaccgacgtaaacgcatccagtttgttcaagac
ttactgaatgattttaaaaagaatttattaccaacgagctaa
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