Vibrio cholerae O1 LMA3984-4: VCLMA_B0582
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Entry
VCLMA_B0582 CDS
T01871
Name
(GenBank) Cold-shock DEAD-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vcl
Vibrio cholerae O1 LMA3984-4
Pathway
vcl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vcl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VCLMA_B0582
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vcl03019
]
VCLMA_B0582
03009 Ribosome biogenesis [BR:
vcl03009
]
VCLMA_B0582
Enzymes [BR:
vcl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VCLMA_B0582
Messenger RNA biogenesis [BR:
vcl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VCLMA_B0582
Ribosome biogenesis [BR:
vcl03009
]
Prokaryotic type
rRNA helicases
VCLMA_B0582
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
AEA80211
LinkDB
All DBs
Position
II:complement(631039..632973)
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AA seq
644 aa
AA seq
DB search
MQDTAIQFSDLALNSAILSALTEMGFVSPTPIQAAAIPVLLDGRDALGKAQTGTGKTAAF
SLPLLNKLNLSQYKPQAIVMAPTRELAIQVAAEIKNLGQNIKGLKVLEIYGGASILDQMR
ALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEMLKMGFVDDVTWIMEQAPES
AQRVLFSATMPPMVKEIVERFLRNPECVDVAGSNQTVAKVEQQYWVVKGVEKDEAMARLL
ETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV
ATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI
ERVTRSSMEEIQLPHRDKVAESRLTKLGQELAADKEFSSLERFADLVEKLQASLEIDATT
LAAILLKRQQGKRPLFYVGADPMIEAMEREKSRRRERRDDRRDGDRPARREFGGRDSGQE
NHDWDTYQLQVGRDQGVQVKDIVGALANELGLTKGSIGAIKLAQGHTFVQLPKAMSSDVS
SKLRKLRIRQKEVGAVVCEFDDFRESRGGARREGGAREGGRRPEGNREGGFRGGREGGRE
GGRGRGGEGRPFREGERRFERNRSGESSGSYRGERGHSRRREEA
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgcaagatactgcaattcaattcagtgatttagcactgaacagcgccatcctttctgcc
ctaaccgaaatgggcttcgtatcaccaacacctatccaagcagcagcgattcctgttctg
cttgacggtcgtgatgcactgggtaaagcgcaaacaggtacaggtaaaacagcggcattc
tccttgcctctgctgaacaaacttaatttatctcagtacaaaccacaagctatcgttatg
gcgccaacgcgtgaactggcgattcaggtagcggctgagatcaaaaacctaggccaaaat
atcaaaggcctcaaggttcttgagatctacggtggtgcttcgattcttgatcaaatgcgc
gctctgaaatctggcgctcacattgttgtgggtactccgggtcgagtaaaagatctgatc
actcgtgatcgtctacacctagacgaatgtcatactttcatcctggatgaagcagacgaa
atgctgaaaatgggcttcgttgatgacgttacttggatcatggaacaagctccagagtct
gcacaacgtgtactgttctctgccactatgccgccaatggttaaagaaatcgttgagcgt
tttctgcgtaatccagagtgtgttgacgtagccggttctaaccaaacggtcgcgaaagtt
gagcaacaatactgggtagtaaaaggcgtagagaaagatgaagcgatggctcgtctgctt
gaaaccgaagagaccgatgcttctatcgtattcgtacgtactcgtcaggatactgagcgt
ctagccgattggctgtgtgcgcgtggctttaaagctgcagctctgcacggtgatatccct
cagtctctgcgtgagcgcaccgttgatcatatcaaacaaggtgtgattgatattctggtt
gcgactgacgtcgtcgctcgtggtctagatgttcctcgtatcactcacgtgtacaactac
gatattccattcgatgtggaatcttacatccaccgtatcggccgtactggtcgtgctgga
cgtaaaggtaaggcgatcctgctggttcgtactaaccaaatccgcatgctacgcactatc
gagcgtgtgactcgttcttcaatggaagagatccaattgccgcaccgcgataaagtggct
gaatctcgtctgactaagttgggtcaagagctggcagcagataaagagttcagctcgctg
gagcgtttcgcagatctggttgaaaaactgcaagcgtcactggaaatcgatgcaacgact
ctggctgcaatcctgctgaaacgtcagcaaggtaagcgtccactattctatgtcggtgca
gacccaatgatcgaagcaatggagcgtgaaaaatcacgtcgtcgtgagcgtcgtgatgac
cgccgtgatggtgaccgtcctgctcgtcgtgaatttggtggccgtgactcaggtcaggaa
aaccacgattgggatacctaccaactgcaagtcggccgtgaccaaggcgtacaagtgaaa
gacatcgtcggtgcactagcaaacgaactcggtttgaccaaaggttctatcggtgcgatc
aaactggctcaaggccatacgtttgttcagttgccaaaagcaatgtcgagcgatgtttct
agcaaactccgtaagctgcgcattcgccagaaagaagtgggtgcggttgtatgtgaattt
gatgatttccgcgaatctcgtggcggtgcacgtcgtgaaggtggtgcacgcgaaggtggt
cgtcgtccagagggcaaccgtgaaggcggtttccgtggcggtcgtgaaggtggccgcgaa
ggtggtcgtggccgtggtggcgaaggccgtcctttccgtgaaggtgagcgtcgttttgag
cgcaaccgcagcggtgagagcagtggtagctaccgtggtgagcgtggccatagccgtcgt
cgcgaagaagcataa
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