Aliivibrio fischeri ES114: VF_0488
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Entry
VF_0488 CDS
T00236
Symbol
truB
Name
(GenBank) tRNA pseudouridine synthase
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
vfi
Aliivibrio fischeri ES114
Brite
KEGG Orthology (KO) [BR:
vfi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vfi03016
]
VF_0488 (truB)
Enzymes [BR:
vfi01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
VF_0488 (truB)
Transfer RNA biogenesis [BR:
vfi03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
VF_0488 (truB)
Prokaryotic type
VF_0488 (truB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB-C_2
TruB_C_2
Motif
Other DBs
NCBI-ProteinID:
AAW84983
UniProt:
Q5E7L3
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All DBs
Position
I:524425..525375
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AA seq
316 aa
AA seq
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MARRRKGRPVNGVILIDKPTGITSNDTLQKVKRIYFAEKAGHTGALDPLATGMLPICLGE
ATKFSQFLLDSDKRYRVVAKLGERTNTSDSDGEVVQTREVKVDRGQLERCIAKFRGTTDQ
IPSMFSALKYQGRPLYEYAREGIEVPRESRKITVYSIELLRFEGHEVEMEVHCSKALTFV
RLPTILGEMLGCGAHVTYLRRTGVSNYPYENMVTIEDLEALLEQAHREERAPRELLDPLL
MPMDSAVQDLPEVNMIPELADHVLHGQPVQVFGAPQDGIVRMTSGDERLFIGVGHIDDDG
RVAPKRLVVFRDEEEK
NT seq
951 nt
NT seq
+upstream
nt +downstream
nt
atggctcgccgtcgtaagggtcgtccggttaatggtgttatcttaattgataaaccaaca
ggtattacttcaaacgatactctgcaaaaagttaaacgcatttactttgctgaaaaagca
ggtcatacaggtgcacttgatcctctagcaacaggtatgcttcctatttgcttaggtgaa
gcaacgaagttttcccagtttcttttagactcagataaacgttaccgtgttgtcgctaaa
ctgggtgaacgtacgaatacttcagactcagatggtgaagtggttcaaactcgtgaagta
aaagtggatcgcggtcaacttgagcgttgtattgcgaaattccgtggtacaacggatcaa
attccatcgatgttctcagcattaaaataccaaggtcgtcctttgtatgaatatgctcgt
gaaggcattgaagtacctcgtgagtctcgtaagatcactgtttactctattgaattactt
cgctttgaaggtcatgaagtagaaatggaagtacattgttcaaaagcacttacattcgta
cgattaccgacgattttaggcgaaatgctgggttgtggtgcgcacgtaacttatttacgt
cgtactggtgtatcgaattatccatatgagaatatggtaacgattgaagacttagaagca
ttacttgaacaagctcatcgtgaagagcgtgctcctcgtgagttacttgatccattacta
atgccaatggattcagcggtacaagacctacctgaagtgaatatgatccctgaattggct
gatcatgtgcttcatggccaaccggttcaagtgtttggtgctccgcaagatggcatcgta
cgtatgacatcgggtgacgaacgtctattcattggtgtgggtcacattgatgatgatggt
cgcgttgctcctaagcgcttagttgtttttcgagatgaagaagaaaaataa
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