Aliivibrio fischeri ES114: VF_0490
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Entry
VF_0490 CDS
T00236
Symbol
pnp
Name
(GenBank) polynucleotide phosphorylase (PNPase)
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
vfi
Aliivibrio fischeri ES114
Pathway
vfi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vfi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VF_0490 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vfi03019
]
VF_0490 (pnp)
03016 Transfer RNA biogenesis [BR:
vfi03016
]
VF_0490 (pnp)
Enzymes [BR:
vfi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
VF_0490 (pnp)
Messenger RNA biogenesis [BR:
vfi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
VF_0490 (pnp)
Transfer RNA biogenesis [BR:
vfi03016
]
Prokaryotic type
tRNA degradation factors
VF_0490 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_2
KH_2
SLS1_KH2
Motif
Other DBs
NCBI-ProteinID:
AAW84985
UniProt:
Q5E7L1
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All DBs
Position
I:526147..528276
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AA seq
709 aa
AA seq
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MFANPVVKSFQYGNHTVTLETGVIARQATAAVMASMDDTSVFVSVVAKKEAVPGQDFFPL
TVNYQERTYAAGKIPGGFFKREGRPSEAETLTARLIDRPIRPLFPDAFKNEVQVIATVVS
INPEVNPDMITMIGTSAALAIAGIPFNGPIGAARVGHINGELVLNPSNTELENSKLDLVV
SGTEGAVLMVESEADNLTEEEMLSAVVFGHEQQQVVINAINEFAAEVATPAWDWVAPEEN
TVLNARIAELAEAKLVEAYQITEKMTRYDRIHEIAAEVNEVLVSENEDVNLKEVHTIFHD
LEKTVVRRSIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQ
RDAQIIDSLMGEKKDHFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIQAVMPSIE
EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLS
DILGDEDHLGDMDFKVAGTNEGITALQMDIKIEGITKEIMQIALNQAQGARKHILKVMDE
AISGAREEISEFAPRIHTMKISSDKIKDVIGKGGAVIRALCEETGTTIEIEDDGTIKIAA
TEGAAAKEAIRRIEEITAEVEVGKIYTGKVMRIVDFGAFVTVLGPKEGLVHISQIAEERI
EKVADHLQVGQEVKTKVLEIDRQGRIRLSIKEANAELNPAPAAEAKDAE
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgttcgcgaatccagtcgtaaaatcatttcagtacggtaaccataccgttactctagaa
acgggtgtaattgctcgtcaagctacagctgctgtaatggcaagcatggacgatacatct
gtattcgtttctgttgttgctaagaaagaagcggttccaggccaagatttcttcccacta
acagttaactaccaagagcgtacgtacgctgcgggcaaaatccctggtggtttctttaag
cgtgaaggtcgtccttctgaagctgaaacactaacagctcgtctaattgaccgtccaatc
cgtcctcttttccctgatgcattcaaaaacgaagtacaggtaattgcaacggttgtttct
atcaaccctgaagttaacccagacatgatcactatgatcggtacgtctgcggcattagct
atcgctggtattccatttaatggtcctatcggtgctgcacgtgttggtcacatcaacggt
gagcttgttcttaacccatcaaatactgaacttgaaaactctaaactagacctagttgtg
tctggtacagaaggtgcagtattaatggttgaatcagaagctgataacctaactgaagaa
gaaatgctttctgctgttgtattcggtcacgaacaacaacaagtagttatcaacgctatc
aacgaattcgctgctgaagttgcaactccagcatgggattgggttgctccagaagagaac
acagttcttaacgcgcgtattgcagagttagcagaagctaaattagttgaagcttaccaa
attactgaaaaaatgactcgttacgatcgcattcatgaaatcgcagctgaagttaacgaa
gttctagtatctgaaaacgaagacgtgaacctaaaagaagttcacactatcttccacgat
ctagagaaaacagttgtacgtcgcagcatcatcgctggtaacccacgtatcgatggtcgt
gaaaaagacatggttcgtgcgctagacgtacgtactggtgttcttccacgtactcacggt
tcttctctattcacacgcggtgaaactcaagctcttgttactgcaacgcttggtacacaa
cgtgatgctcaaatcatcgatagcctaatgggtgagaagaaagatcacttccttctacac
tacaatttccctccatactgtgtaggtgaaactggttttgttggttctcctaagcgtcgt
gaaatcggtcacggtaaactggctaaacgtggtatccaagcggttatgccttctattgaa
gaattcccatacacagtacgtgtagtatcggaaatcactgaatctaacggttcatcttca
atggcttctgtatgtggtacatctctagctcttatggatgctggtgttccaattaaagca
tctgttgctggtatcgcaatgggtcttgtgaaagaaggtgacgatttcgttgttctttct
gatattctaggtgacgaagaccaccttggtgatatggactttaaagtagcgggtactaac
gaaggtatcactgcacttcaaatggatatcaaaatcgaaggcatcactaaagagatcatg
cagatcgctctaaaccaagctcaaggtgcgcgtaagcacatccttaaagttatggatgaa
gctatctctggtgctcgtgaagagatctctgaatttgctccacgtatccacacaatgaag
atcagctctgataagatcaaagatgttatcggtaaaggtggtgcagttatccgtgctctt
tgtgaagagactggtacaactatcgaaatcgaagatgacggtacgatcaaaatcgctgca
actgaaggcgctgctgctaaagaagcgattcgtcgcatcgaagagatcactgctgaagtt
gaagttggtaagatctacacaggtaaagttatgcgtatcgtagatttcggtgcgttcgta
acggttcttggtcctaaagaaggtctagttcatatttctcaaatcgcagaagagcgcatc
gagaaagtagctgatcacctacaagttggtcaagaagtgaaaactaaagtacttgaaatc
gaccgtcaaggccgtatccgtctaagtattaaagaagcaaatgctgaactaaacccagca
cctgctgctgaagcaaaagacgcagaataa
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