Virgibacillus sp. SK37: X953_02980
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Entry
X953_02980 CDS
T03219
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vir
Virgibacillus sp. SK37
Pathway
vir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
X953_02980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vir03019
]
X953_02980
03009 Ribosome biogenesis [BR:
vir03009
]
X953_02980
Enzymes [BR:
vir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
X953_02980
Messenger RNA biogenesis [BR:
vir03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
X953_02980
Ribosome biogenesis [BR:
vir03009
]
Prokaryotic type
rRNA helicases
X953_02980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
Ferritin_2
AAA_19
Motif
Other DBs
NCBI-ProteinID:
AIF42379
UniProt:
A0A075JKA2
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All DBs
Position
540312..541799
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AA seq
495 aa
AA seq
DB search
MTAFKELGVSAPIMKALEKMGFEEATPIQSETIPLAMQGNDVIGQAQTGTGKTAAFGIPM
IEKIDSKQRKIQGLVVAPTRELAIQVAEEVNRLAKFKGIRALAVYGGQHMDRQIRALKDG
PQIVVATPGRLLDHMRRKTIKIDMVQTAILDEADEMLNMGFIDDIRDILKGIPEERQTLL
FSATMPKEIRDIATNLMKDPKEIKVKAKEMTVENIDQYFVEIPEKFKFDTLNNHLDIHSP
ELAIVFSRTKKRVDEITEGLQARGYRAEGIHGDLTQGKRMSVLNKFKSGRVDVLVATDVA
ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGEAISFITPREMAHLHLIEKTTK
SKMKRLMPPTNKDAQQGQQQVTVDKLLSTIEKQDLKAYHETASELLEDNDSVTVIAAALK
LLTKERRDTPVKISSVAPISVKKAQNSRDNRRSNNKRFQGKRGQGGRNQGGRNQGGRHQG
GRNRKGNFQKRRNND
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
gtgacagcatttaaagaactcggggtatcagccccaattatgaaagcattggaaaaaatg
ggatttgaggaagcaactccgatccaatcagagacaattccacttgcgatgcaaggaaat
gatgtgattggacaagcacagaccggaactggaaagacagctgcattcggtattccaatg
attgaaaaaattgattcaaagcaaagaaagattcaaggtttggttgtagcgccgacacgt
gaactagctatacaggttgctgaagaagtaaaccgtctggcgaaatttaaaggtattaga
gcattagctgtgtatggcggccagcatatggacagacaaatccgcgcactaaaagacggt
ccgcaaattgttgtagcgactcctggtcgactacttgaccatatgcgcagaaaaaccatt
aaaattgatatggtgcaaacagctatattagatgaagcagatgaaatgcttaatatggga
ttcattgatgatatccgtgacattttaaaaggaattccagaagaaagacaaacattgcta
ttttcagcaacaatgccaaaagaaattcgcgatattgctactaacttgatgaaggatccg
aaagagattaaagttaaggccaaagagatgactgtagaaaatatcgatcagtactttgtc
gaaatccctgaaaaattcaagttcgatacactgaacaatcatttggatattcattcacct
gaacttgccattgtttttagtagaacgaaaaagcgtgtagatgaaattacagaaggactt
caggctagagggtatcgtgcggaaggtattcatggtgatttaacacaaggcaagcgtatg
tctgtgcttaataaatttaagagtggacgcgttgatgtattagtcgcaaccgatgtggca
gctcgtggtttggatatctcaggcgttactcacgtatataattttgatatacctcaagac
cctgagagctacgttcaccgtattggtcgtacaggtagagctgggaaaacaggtgaagct
atttcctttattacaccgagagaaatggcgcatcttcacttgatagaaaaaacaactaag
agtaaaatgaagcgtctgatgcctcctacgaataaagatgctcaacaaggacaacagcaa
gtaactgtagacaagctcttgtcaacaattgaaaagcaggacttgaaagcttatcatgaa
actgccagtgaactattggaggacaacgattctgttactgttatagctgctgcgctaaaa
ttgcttacaaaggaacgcagggatacacctgttaaaatctcctctgtagcaccaattagc
gtgaaaaaagcacaaaattcaagagacaaccgtcgttcaaataataaacgtttccaagga
aaacgtggtcaaggtggacgcaatcaaggtggacgcaatcaaggtggacgccatcaaggt
ggaagaaaccgtaaaggaaatttccaaaaacgtagaaacaacgactaa
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