Vibrio parahaemolyticus RIMD 2210633: VP0071
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Entry
VP0071 CDS
T00120
Name
(GenBank) sensory box/GGDEF family protein
Organism
vpa
Vibrio parahaemolyticus RIMD 2210633
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
PAS_9
PAS_4
ABC_sub_bind
PAS
PAS_3
PAS_8
Motif
Other DBs
NCBI-ProteinID:
BAC58335
UniProt:
Q87TJ7
LinkDB
All DBs
Position
1:82010..85150
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AA seq
1046 aa
AA seq
DB search
MQRFLILVAFFWSACAWSELTLAQEPKVLVVHSYHQGFFWTDSIQRGIDQQLDDREMDMR
VLYLDSKRNQSEQFFTQLESLYRTKLSDERFDAILVTDNNALELMQHLAPLIKDTPVIFC
GINNYRPSFHQSLNATGVIENVDLEANLALIERLHPDNKQIYIISDHSVTGAILRDEIDD
FIQQHDRYRNKITQLVPDNVEALKKKIAQLNKENVVLFWTYYRDKDGVVGSERDWIQINK
ASNAPLFMVHDVGLGHGAVGGVIQSGYRQGVEAARLLEQVLDHPQEPLPPVVNGDSEIKL
DYQAVVRWGLGAEQESSAVFFNKPMEFSERFAKEIRLFGSLFVLMLVAILLLSYYLQRIR
RSETAARESQAILESIFDQSMQYMGILDKHGLLKSGNDRLQSLLYHQELRLDKPLWLHQN
WSEQARHAIADYFDAPQQQVSTFEAEIWSKEHGSMVLEISLKPFSQQVGKQKQYLFEARD
ITSRKLMEDKLYQRESSLRNYYEQQPVMMVTLDSHNRIQEVNRFAQLLLGYEPIEMLGHR
LREFYLDDKALFPRQVLLQPSHQVHDVWRREIEYRHADGHSVWVRENIRPLNDSDQLLIV
GEDISETKLLAEKLEYQARYDLLTGTYNRNHFELELKTALREVDSHRRVHAMLYLDLDQL
KVLNDTVGHDAGDAAIQFCASMLEEVLPYNSVLARMGGDEFAVLLKDCDEYGAINIAKVI
ISTLGEHLFIWEDTRLFISCSVGIRIIDHTAETPQMVHAQADSACHAAKEQGRNRYNLFS
LDNEELQRRQMEMQSVNLVHEALSNQRLELFAQRVMNLQSPESLMYFEILVRIRDAQGNY
VSPAIFIPASERYNIAHWIDKQVINQALEWFEQRPDVVEKLGRCSINLSGQSMGNQEFID
FLFERLKNSTMPCEKICLEITETAAMGNLDQAIDFFTRAKSLGCMIALDDFGSGLSSFGY
LKKLPVDIVKIDGLFVRDIDVNEMDRVMVRSINDLAKQLGKVTVAEFVENEQVMQHLIDL
GVDYGQGYGIGHPKPLAELVENLSSL
NT seq
3141 nt
NT seq
+upstream
nt +downstream
nt
gtgcagcgttttctgattttggtcgccttcttctggagtgcatgtgcctggagtgaactg
acacttgctcaagagccgaaggtgcttgtcgtccattcttatcatcaaggattcttttgg
acggattccattcagcgcgggatcgatcaacaactcgatgaccgcgagatggacatgcgc
gtcttatacttggattccaagcgcaaccagagcgagcagttttttacccagctcgaatca
ctctatcgcaccaagttgagcgatgagcgttttgatgccattttggtgacggacaataat
gcattggaattgatgcaacacttggcgccgttgatcaaagacacgccagtgattttctgt
ggcatcaacaattaccgtccttcctttcatcaatcacttaacgcaaccggcgtgattgag
aacgtcgatttagaagcgaacttagcgctgatcgagcgtttgcatccagacaacaagcag
atttacatcatcagtgaccattcggtgactggtgcaatacttcgcgacgagattgacgat
tttatccaacaacatgaccgttatcgcaacaagatcactcaacttgtccctgacaatgtt
gaagcattgaagaaaaaaatcgctcaactcaataaagaaaatgtggtgctgttttggact
tactaccgcgacaaagatggcgtggtcggcagcgaacgtgactggattcagatcaacaag
gcctccaacgcgccattgtttatggtacacgacgtaggtttgggtcatggcgcggtgggc
ggcgtgattcaaagcggttatcgccaaggtgttgaagcggctagattacttgaacaggtg
ctcgaccacccacaagaaccgttacctccggtggtgaatggcgattctgaaatcaagctc
gattaccaagcggtcgtgcgctgggggttgggcgccgagcaagaatcctcggcggtcttt
tttaataagccgatggaattttcggagcgtttcgccaaagaaattcgcttgtttggcagt
ttgttcgtgttgatgctggtggccattttgctactgagctactacttgcaacgcattcgt
cgcagcgagacggctgctcgtgaaagccaggcgattttagagtccatttttgaccaaagt
atgcagtacatggggattttggataaacatggtttgcttaaatctggcaacgatcgtctg
caatctttactctatcatcaggaattacgcttagataagccactttggctacatcaaaac
tggagtgagcaagcacgccacgcgatcgccgattattttgacgcaccgcagcaacaagtt
tcgacatttgaagccgaaatctggagcaaagagcacggctctatggtactcgaaatttcc
ttaaagccgttctcccagcaggtaggcaaacaaaagcagtatctgtttgaggcgcgtgat
atcaccagccgtaagttgatggaagataagctctatcagcgtgagtcgagcttgcgtaat
tactacgagcagcagcccgtgatgatggtgacgctcgacagtcacaaccgcatccaagaa
gtgaaccgattcgcgcagctgttattgggctacgagccgattgagatgctcggccatcgc
ctgcgagagttctatcttgatgacaaagcactgttcccacgccaggtgttgttgcaaccg
agtcatcaagttcatgatgtatggagacgtgaaatcgagtatcgccatgctgacgggcac
agtgtttgggtacgcgaaaacattcgaccgctcaacgattccgatcagttgctgattgtg
ggtgaagacatttcagagaccaaacttttggctgagaagttagagtatcaggcgcgttat
gacttattgacggggacatacaaccgcaaccactttgagttggagttgaaaaccgcgctg
cgtgaagtggatagccaccgccgagtgcatgcgatgttgtacctcgatctcgaccagttg
aaagtgcttaatgacaccgttgggcacgatgcgggcgatgccgcgattcaattttgcgcc
agcatgttggaagaggtgctgccatacaattccgtgcttgcgcgaatgggcggcgatgaa
ttcgcggtgctactgaaagattgcgacgagtatggcgcgatcaatattgctaaggtgatt
atctccacattgggtgagcacctgtttatctgggaagacacacgcttattcatcagttgc
tcggtcggcattcgtatcatcgaccacacggcagaaacgccgcaaatggtgcacgcgcaa
gcagattcggcctgccatgcggcgaaagagcaggggcgtaaccgttacaatctattcagc
ttagataatgaagagttgcagcgtcgtcagatggaaatgcagagcgtcaacttggtgcac
gaggcgttgtccaatcaacgcttggagctgtttgctcaacgagtgatgaatttgcagtcg
ccagagtcgctgatgtatttcgagattttggtgcgtattcgtgacgcgcagggcaactac
gtctctccggcgattttcattcccgcctccgagcgttataacattgcgcattggattgat
aagcaggtgatcaaccaagcgcttgaatggtttgaacagcgaccagacgtagtggaaaag
ttggggcgttgctcgattaacctttctggtcaatccatggggaatcaggaatttatcgat
tttctcttcgaacgattgaaaaactcgaccatgccgtgcgaaaaaatctgtttagaaatc
acagagacggcggccatgggcaatttagatcaagccatcgactttttcaccagagccaaa
tcgctcggctgtatgattgcgctggacgattttggttcgggcttgtcgtcttttggttac
ttgaagaaacttcctgtagatatcgtgaaaattgatggccttttcgtgcgagatatcgac
gtgaatgaaatggaccgagtgatggttcgctccattaacgatttggcgaagcagcttggc
aaagttacggtggcggaatttgtcgaaaacgaacaagtcatgcagcacttgatcgacctt
ggtgtggattacgggcaaggttatggcattggtcacccgaaaccgttggctgaactggtc
gagaatctctcttcgctttaa
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