Variovorax paradoxus B4: VAPA_1c41720
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Entry
VAPA_1c41720 CDS
T02835
Symbol
trpS
Name
(GenBank) tryptophan--tRNA ligase TrpS
KO
K01867
tryptophanyl-tRNA synthetase [EC:
6.1.1.2
]
Organism
vpd
Variovorax paradoxus B4
Pathway
vpd00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
vpd00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
VAPA_1c41720 (trpS)
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
vpd01007
]
VAPA_1c41720 (trpS)
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vpd03016
]
VAPA_1c41720 (trpS)
Enzymes [BR:
vpd01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.2 tryptophan---tRNA ligase
VAPA_1c41720 (trpS)
Amino acid related enzymes [BR:
vpd01007
]
Aminoacyl-tRNA synthetase
Class I (G)
VAPA_1c41720 (trpS)
Transfer RNA biogenesis [BR:
vpd03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Other AARSs
VAPA_1c41720 (trpS)
Prokaryotic type
VAPA_1c41720 (trpS)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA-synt_1b
tRNA-synt_1f
DUF1508
Motif
Other DBs
NCBI-ProteinID:
AGU51249
UniProt:
T1XFY9
LinkDB
All DBs
Position
1:4436394..4437725
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AA seq
443 aa
AA seq
DB search
MASSSSAPLRVLTGITPSGTPHLGNYVGSIRHSVRQSVAPGVESFFFLADYHALIKVQEP
ALIQRSTLEIAASWLACGLDPERVTFYRQSDIVEIPELTWFLTCVTGKGVLNRAHAYKAQ
LDKNIAKGEDPDADVTAGLFMYPVLMGADILMFNAHKVPVGRDQVQHIEMARDMAQRFNH
QYGEHFTLPEAEIDDAVATLPGLDGRKMSKSYGNTIAMFAPRAQLQKQIASIVTDSRAPG
EPKDTEGSALFQIYQAFATAEETEALRKAYADGIGWGDAKQLLFERIDLEVAPLRARYEA
LMNDPTEIERILLIGAEKARSISRPFMAELRYAVGLRNLAAGRDKGGARKAAKVAKPSFK
QYRERDGLFYFKLLDAHGATLLQSRGFASPQEAGRAIAALQQQRGAALATLAEQLEPTGP
EELRAANEALEALAETTTSTNGS
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgtcttcttccgctcccctgcgcgtgctgaccggcatcacgccgtccggcacg
ccgcacctcggcaactacgtcggctcgatccgccattcggtgcggcagagcgtcgcgccg
ggcgtcgagagcttcttcttcctggccgactaccacgcgctcatcaaggtgcaggagccg
gcgctcatccagcgctccacgctcgagatcgccgccagctggctggcctgcgggctcgat
ccggaacgcgtcaccttctatcgccagtcggacatcgtcgagattcccgagctgacgtgg
ttcctcacctgcgtgacgggcaagggcgtgctcaaccgcgcccacgcctacaaggcgcag
ctcgacaagaacatcgccaagggcgaagacccggatgccgacgtgacggccggcctcttc
atgtacccggtgctgatgggcgcggacatcctgatgttcaacgcgcacaaggtgcccgtg
gggcgcgaccaggtgcagcacatcgaaatggcgcgcgacatggcgcagcgcttcaaccac
cagtacggcgagcacttcacgctgcccgaagccgagatcgacgatgccgtcgccaccctg
cccggcctcgacggccgcaagatgagcaagagctacggcaacacgatcgccatgttcgcg
ccgcgcgcgcaactgcaaaagcagattgccagcatcgtgaccgactcgcgcgcacccggt
gagcccaaggacaccgaaggctcggcgctgttccagatctaccaggcctttgccaccgcc
gaagaaaccgaagcgctgcgcaaggcctatgccgacggcatcggctggggcgacgcgaag
cagttgctcttcgagcgcatcgacctcgaagtggcgccgctgcgcgcgcgctacgaagca
ctgatgaacgacccgacagagatcgagcgcatcctgctcatcggcgccgaaaaggcgcgc
agtatctcgcgccctttcatggcggagttgcgctatgcagtggggctgcgcaatctcgcg
gcgggccgcgacaagggcggtgcccgcaaggcggccaaggttgccaagccaagcttcaag
cagtaccgcgagcgcgacggactgttctatttcaagctgctcgacgcgcacggtgccacc
ctgctgcagagccgcggattcgcctcgccgcaggaagccggccgcgccatcgccgccctg
cagcagcagcgcggcgcggcactggccacgctcgccgagcagctcgagccgaccggcccg
gaagaattgcgcgccgcgaacgaggcgctggaagcactggcggagacaacaacctctacc
aacggaagttga
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