Variovorax paradoxus EPS: Varpa_5411
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Entry
Varpa_5411 CDS
T01392
Name
(GenBank) transcriptional regulator, CdaR
Organism
vpe
Variovorax paradoxus EPS
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HTH_30
GAF
GAF_2
GGDEF_2
GAF_3
Motif
Other DBs
NCBI-ProteinID:
ADU39566
UniProt:
E6V8E2
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Position
5876956..5878968
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AA seq
670 aa
AA seq
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MPAPPHERKRTNGPSLGQTGEEIAPELIGLLHRNASAEEFAACLAHVESLPDALQRKPGL
VELVRMAMALRNRLELHEQRERGMLAVIESAQDLSSRLDLTGLLKAIVSRARKLMGAHLC
WLTIYDTASGEFQVVVADGAISDRTGKMTAGRNLGVAGIVMSTRLPFFTPDYLHDNRFAH
DPALDDTFRDEGVAALVGAPLMCDDNVIGLLFVADRYHRTHTALNVSILCTLATHAAVAI
NNAKAFAEAKTALDNADLARAELERHARDVQEAAEAHEQLTSLLAKGASLGALCESVAQL
LNGSVLVLDEASEVIGRATAPGYTGTAADAYAPHDEHSAALAQALRESRQAGRSAVAYTR
GGELCRAIAVIGGNDVLGAVLLFRHEDLRDISVRTFERSSSVIGVVLLSQERVEASKSRD
VSALLHTLISPRQDEPALTQDRAERFGLDLSQPISLMVVEMEQPRPGFWARRLRTGAPLS
DLVMDEVDGALAIVCGATKAQDVLAQFTAFASRELGDAYRGVLSRPVRTPAEMPALYATL
RRALAVLGRLGMRGHIVGQNEMALYSVLFETHDQASLNTFLNAAIGAVMGHDRKRGSELT
ATLLAYFDNNQNAKTTAARMGIHVNTVRQRLASVEELLGHWGNASRALEIHVALRLWSLG
MAGDAPALEG
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgccggcaccgccccacgaacgaaagcgaacgaacggcccgtcgctgggccagacaggc
gaagagatcgcacccgagctcatcggcctcctgcaccggaacgcatccgcggaagagttc
gccgcctgcctcgcgcatgtcgagtcactgcccgatgcgctgcagcgcaagcccggcttg
gtggaactggtgcgcatggccatggcgctgcgcaaccggctcgaactgcacgagcagcgc
gaacgcggcatgctcgcggtgatcgaatccgcgcaggacctctcgagccgcctcgatctc
acgggcctgctgaaagccatcgtgagccgcgcgcgcaagctgatgggcgcgcacctgtgc
tggctcacgatctacgacacggcgagcggcgagttccaggtggtcgtggccgacggcgcc
atctccgaccgcaccggcaagatgaccgccggcagaaacctgggcgtggcgggtatcgtg
atgtccacgcgcctgcccttcttcacgcccgactacctgcacgacaaccgcttcgcgcac
gaccccgcgctggacgacaccttcagggacgaaggcgtcgccgcgctggtcggcgcgccg
ctcatgtgcgacgacaacgtgatcggcctgctcttcgtggccgaccgctaccaccgcacg
cacacggcgctgaacgtgtcgatcctctgcacgctcgccacgcacgcggccgtcgccatc
aacaacgccaaggcttttgcggaagcgaagacggcgctggacaacgcggacctcgcgcgc
gccgaactcgagcggcatgcgcgcgatgtgcaggaggcggccgaggcgcacgagcaactc
acctcgctgctcgcgaagggcgcgtcgctcggcgcgctgtgcgagtcggtcgcgcagctt
ctgaatggcagcgtgctggtgctcgacgaagccagcgaggtgatcggccgcgccaccgca
ccgggctacaccggcacggcggccgatgcctatgcgccgcacgacgagcacagcgccgcg
ctggcgcaggcgctgcgcgagagccgccaggccggccgctcggcggtcgcctacacacgc
ggcggcgagctttgccgcgcgatcgcggtgatcggcggcaacgacgtgctcggcgcggtg
ctgctcttccggcacgaggacctgcgggacatctcggtgcgcaccttcgaacggagctcg
agcgtcatcggcgtcgtgctgctctcgcaggagcgcgtggaggcgagcaagagccgcgat
gtctcggcgctgctgcacacgctcatctcgccgcggcaggacgaacccgccctcacgcag
gaccgcgccgaacgcttcggcctcgacctgtcgcagccgatctcgctgatggtggtcgag
atggagcagccgcggccgggcttctgggcgcgccgcctcaggaccggcgcaccgctctcg
gacctggtgatggacgaagtcgacggcgcgctggccatcgtgtgcggtgcgacgaaggcg
caggatgtcctggcgcaattcaccgcattcgccagccgcgagctcggcgatgcctatcgg
ggcgtgctgtcgaggccggtgagaacgcccgcggaaatgccggccctgtatgcgacgctg
cggcgcgcgctcgcggtgctgggccgcctgggcatgcgcggccacatcgtcgggcagaac
gagatggcgctgtattcggtgctcttcgagacgcacgaccaggcgagcctgaacaccttc
ctgaatgcagccatcggtgccgtgatgggtcatgacaggaagcgcggctcggaactcacg
gccacgctgctggcgtatttcgacaacaaccagaacgcgaagacgaccgctgcgcgcatg
ggcatccacgtcaacacggtgcggcagcggcttgccagcgtggaagaactgctggggcac
tggggcaacgcgagccgggcgctggagatccatgtggcgctgaggctctggagcctcggc
atggcgggcgacgcgccggcgctcgagggctga
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