Vibrio parahaemolyticus O1 Kuk FDA_R31: M634_05990
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Entry
M634_05990 CDS
T02761
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
vpf
Vibrio parahaemolyticus O1:Kuk FDA_R31
Pathway
vpf03030
DNA replication
vpf03410
Base excision repair
vpf03420
Nucleotide excision repair
vpf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vpf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
M634_05990 (ligA)
03410 Base excision repair
M634_05990 (ligA)
03420 Nucleotide excision repair
M634_05990 (ligA)
03430 Mismatch repair
M634_05990 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vpf03032
]
M634_05990 (ligA)
03400 DNA repair and recombination proteins [BR:
vpf03400
]
M634_05990 (ligA)
Enzymes [BR:
vpf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
M634_05990 (ligA)
DNA replication proteins [BR:
vpf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
M634_05990 (ligA)
DNA repair and recombination proteins [BR:
vpf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
M634_05990 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
M634_05990 (ligA)
MMR (mismatch excision repair)
DNA ligase
M634_05990 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
M634_05990 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
DNA_pol_lambd_f
5_3_exonuc
DUF4874
DZR_2
Motif
Other DBs
NCBI-ProteinID:
AGQ90365
LinkDB
All DBs
Position
I:1216193..1218205
Genome browser
AA seq
670 aa
AA seq
DB search
MSESVHQRLEELKESLHYHAVRYYVEDNPEIPDAEYDRLMRELLEIEAQHPDLVTVDSPS
QRVGGKPLSEFSQVTHEVPMLSLDNAFDDSELDSFHKRAQDRIGGESIKQYCCEPKLDGL
AVSLLYENGVLVQAATRGDGTTGENITENVRTINAIPLKLRGDDWPARLEVRGEVFMPKA
GFEKLNELARQKGEKVFVNPRNAAAGSLRQLDSRITASRPLSFYAYSVGVVQGADLAASH
YERFLQIKSWGLPMCPETKRVDSLADVKTYYQDILQRRDALPYEIDGVVIKIDDIAVQER
LGFVARAPRWAIAYKFPAQEEITTLNEVEFQVGRTGAITPVAKLEPVFVGGVTVSNATLH
NADEIERLQVKIGDQVVIRRAGDVIPQVVSVIKERRPETARDIIFPTQCPVCGSHVERIE
GEAVTRCTGGLVCQAQRKQALKHFVSRKALDVDGLGDKVIEQLVDREMVETPADLFKLSA
GVLTVLERMGPKSAQNIVNALEKSKLTTLPRFLYSLGIREVGEATAANLAQHFKSLEAIQ
AATEEQLIAVQDIGVVVAKHITTFFEEEQNQAVVQDLLVQGIHWPEVSAPEQGAELPLEG
KTVVLTGTLSQLGRTEAKEALQSLGAKVTGSVSKKTDILFAGENAGSKLTKAQELGIEIK
TEQDLLELIN
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaatcagtacatcaacggctagaagaactcaaagagtcgttgcactaccacgcc
gttcgctactacgtggaagataatccagagattccagatgcagaatacgatcgcctaatg
cgtgaactgctagaaattgaagctcaacatcctgatttagtgacggttgattcgccaagt
cagcgagtgggtggtaagccgctttctgaatttagtcaggtgacacacgaagtcccaatg
ttgtcattggataacgcattcgacgacagtgaactcgacagcttccataaacgtgctcaa
gaccgaatcggtggagaaagcattaagcagtattgttgtgaaccaaagctagatggctta
gccgtgagtctgctgtatgaaaacggtgttttagttcaagcggcaacgcgtggtgatggt
actacgggtgaaaacatcactgaaaacgtgcgcaccattaatgccattcctctgaagctg
aggggtgatgactggccagctcgtcttgaggttcgtggtgaagtgtttatgccgaaagcg
ggctttgaaaagttgaatgagcttgcgcgtcagaagggcgaaaaagtatttgtgaaccct
cgcaatgcagcagcaggcagtttacgtcaattagattcgcgtattacggcttcgcgccca
cttagcttctacgcatacagtgttggagttgtgcaaggggctgatttggcagccagtcac
tatgagcgttttttacagataaaatcttggggactgccaatgtgtccagaaaccaagcga
gtcgacagtttggcagacgtaaaaacttattatcaagacattctgcagcgtcgtgatgca
ttaccttatgaaattgacggagtcgtgatcaaaattgacgatattgccgttcaagagcgc
ctgggttttgttgctcgcgctccacgttgggcgatcgcatacaaattcccggctcaagaa
gaaatcaccacattgaatgaagttgagttccaagttggccgaacgggagcgatcactccg
gttgctaagttagagcccgtgtttgttggtggtgtgacggtgagtaacgcaacgctgcat
aatgcggatgaaattgagcgccttcaagtaaagattggtgatcaggtcgtgattcgtcgt
gctggcgatgtgattccacaagtggtttctgtcattaaagagcgtcgaccagaaacggcg
cgagatattattttcccaactcagtgtcctgtttgtggttcgcacgtagagcgtatcgaa
ggggaggcggtgactcgatgtactggcggtttggtctgtcaagctcaacgtaagcaagcg
ctcaagcacttcgtctcacgtaaagcgttggatgttgatggtttaggtgacaaagttatc
gagcaattggtcgatcgtgaaatggtagaaacacctgccgatcttttcaagctttcggct
ggcgtattaactgtattggagcgcatggggccaaaatctgctcaaaacattgttaatgcg
ttagaaaaatcgaagttaacaaccttgccacgtttcttatactcgttaggtattcgagaa
gtgggcgaggcaacggcggcaaacctagctcaacactttaaatcactggaagcgattcaa
gctgcaacggaagaacaacttattgctgttcaagatattggtgtggtagttgcgaagcac
attacgactttctttgaagaagagcaaaaccaagctgttgttcaagatctccttgtgcaa
ggtatccattggccagaagttagtgcacctgagcaaggcgcagaactgccactagaaggt
aaaactgtcgtgctaacgggtacactatctcaacttggacgaactgaagcaaaagaggcg
ttgcaatctttgggtgcaaaagtcactggcagtgtttccaagaaaaccgatattttattt
gctggtgaaaatgcaggttctaagctcactaaggctcaagaattgggtatcgagataaaa
actgagcaagacttgcttgaattgataaattaa
DBGET
integrated database retrieval system
