Vibrio mediterranei: BSZ05_11635
Help
Entry
BSZ05_11635 CDS
T04936
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
vsh
Vibrio mediterranei
Pathway
vsh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vsh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BSZ05_11635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vsh03019
]
BSZ05_11635
03009 Ribosome biogenesis [BR:
vsh03009
]
BSZ05_11635
Enzymes [BR:
vsh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BSZ05_11635
Messenger RNA biogenesis [BR:
vsh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BSZ05_11635
Ribosome biogenesis [BR:
vsh03009
]
Prokaryotic type
rRNA processing factors
BSZ05_11635
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ASI91464
LinkDB
All DBs
Position
1:complement(2471656..2474619)
Genome browser
AA seq
987 aa
AA seq
DB search
MKRMLINATQKEELRVALVDGQRLFDLDIESPGHESKKANIYKGRITRVEPSLEAAFVDY
GAERHGFLPLKEIAREYFPEGYTYQGRPSIKDVLSEGQEVIVQVEKEERGSKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGEERTELKAALSTLELPQGMGLIVRTAGVGKSAEEL
EWDLRFLLNNWENIKGAADQNPAPFLIHQESNVIVRALRDYLRRDIGEILIDSNTIYERA
RQHIQLVRPDFVNRVKKYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGSDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RLREAVRIDRARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCTGTGVVRDNESLAL
SVLRLIEEEALKDNTSQALAIVPVPIASYLLNEKRRSINHIERVQEVKITIVPDSDMETP
HFEVIRVREGEEQDLLSYLLPKKLEALKEAEAKEAEVEAKPRKIEQPALQGFATPTQNAP
TPAPKPSKPAKVEVKKEEKQPGLISRILSAIGSLFSSNEEPKKEPEKKEEAPKNRNGRQR
RNRNNDQRRRNSKDSRDNDRNKNRRSKPARDDEKESNDNAQESRKQQNRRGKQQDRRNKK
RDETAGKSKVEEQGQQIAADVQAEKKAPRSEEKAAKVKERRQRRKLSKQVRVKDQKAQQE
EQATQVASVETAQTAVEKPQAPEAATEAPAKEEGKQRRNRRSPRHLRASGQRRRRGRDRR
PNPFRLRKGGVASPEMAMGKVMPSYGIVKPKAKAKPEAEVKELVTATGVAMPEMAMGKVI
VMRKPEAIEAPVVTESKADQTVVEAVVEPVQVVAEPVAEAAPAIVEPAAEAVVETEPMVE
VSVSENIVVEEQPTTVEPTPVSPVVEKAVVSFKGHASAPMAKAEGKQELGEIIINAAPIK
AERYQQKGAGSQVATNSASAVMTKPNY
NT seq
2964 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcaaaaagaagagttgcgtgtcgctttggtcgat
ggccagcgactattcgatcttgatatcgaaagtccaggtcacgaatctaaaaaagcgaat
atctacaaaggacgtatcactcgagttgagcctagcctagaggccgcttttgttgactac
ggtgccgaacgccacggtttcctccctctcaaagaaattgcacgcgaatacttccctgaa
ggctacacctaccaaggtcgtccaagtatcaaagatgtcttgagcgaaggccaagaagtg
atcgtgcaagttgagaaagaagaacgcggtagcaaaggtgctgcattgacaaccttcatc
tctctagcaggtagctacttagtactaatgcctaacaaccctcgcgctggcggtatttct
cgtcgcattgaaggtgaagagcgtacagaactaaaagctgccctgagcactctagaacta
ccacaaggtatgggcctaatcgttcgtactgcgggcgtaggcaaaagtgccgaagagctt
gagtgggatttgcgtttcctcctaaacaactgggaaaacattaagggtgcagcagaccaa
aaccctgctccgttcttaatccatcaggaaagtaacgttatcgttcgtgcacttcgtgac
tacctacgtcgcgatatcggcgagatcttgattgatagcaacaccatctacgagcgtgct
cgccagcacattcaattggttcgcccagactttgtgaaccgagtgaagaaatacgaaggt
gaagtaccgctatttagtcactatcagattgaaagccagatcgagtcagcgttccagcga
gaagtgaggcttccatctggtggttctatcgttattgacccaactgaagcacttacttct
atcgatatcaactctgcccgcgctaccaaaggcagcgatatcgaagaaactgcactgaat
actaaccttgaagcagcagatgaaattgctcgtcagctacgtcttcgcgacctaggtggc
ttagttgttatcgactttattgatatgacacctgtacgtcaccaacgtgaggttgagaac
cgtctgcgcgaggcagtacgaattgatcgtgcccgtgttcaaataggtcgtatttctcgt
tttggtctactagaaatgtctcgtcaacgcttgagcccatctttggctgaagcaagtcat
cacatttgcccgcgttgtactggtactggtgtggtgcgtgataacgagtcattagcgcta
tcagtacttcgtctcatcgaagaagaagccttaaaagacaacacgtctcaagctcttgcc
atcgtgccagtgccaattgcttcttacctactaaatgaaaagcgtcgctccattaaccac
attgagcgcgtacaagaagttaagatcactattgttcctgattctgatatggaaacgcct
cattttgaggtaattcgtgttcgtgaaggtgaggaacaagacctgttgtcatacttgcta
cctaaaaagctagaagcactcaaagaggctgaagctaaggaagccgaagtcgaagctaag
ccgcgtaagattgagcaacctgcactgcaaggttttgcgacacctactcaaaacgccccg
actccagcgcctaagcctagtaagcctgctaaggtagaagtgaaaaaagaagagaagcag
cctggtctgatttctcgcatcctttctgctataggttcacttttctcttcaaatgaagag
cctaagaaagaaccagagaagaaagaagaagcacctaagaatcgcaacggcagacagcgt
cgtaatcgaaacaacgatcaacgtcgccgtaatagtaaagattctcgcgataatgatcgt
aacaagaatcgccgtagcaaacctgctcgtgacgacgagaaagagtctaacgacaatgct
caagagtcacgcaaacagcaaaatcgtcgcggtaagcagcaagatcgtcgtaataaaaag
cgcgatgaaacagccggcaaatcaaaagtagaagagcaaggtcagcaaatcgcagctgat
gttcaagctgagaaaaaagcacctcgctctgaagaaaaagcggcgaaagttaaagagcgc
cgtcagcgtcgtaagctttctaagcaagtgcgcgtaaaagatcaaaaagcacagcaagag
gagcaagcaactcaggttgcgtctgttgagacagctcaaactgcggtagaaaagcctcaa
gcacctgaagcagcaacagaagctccagcgaaagaggaaggtaaacaacgtcgtaaccgt
cgttctcctcgtcacttacgtgcaagtggtcaacgtcgacgtcgtggtcgcgatcgtcgc
cctaacccattccgcctacgcaagggtggcgtagcttctcctgaaatggctatgggtaaa
gtaatgccgagctatggcattgtgaaacctaaggcgaaagcgaaacctgaagcggaagtt
aaagagctagtcacagccacaggtgttgctatgcctgagatggcaatgggtaaggttatc
gtaatgcgtaagcctgaagctattgaagcacctgttgtaacagaatcaaaggctgatcaa
acggtcgttgaagcagtagttgagccagttcaagttgttgctgaaccagttgcagaagct
gcaccagcaatcgttgagcctgctgcagaagccgttgttgaaaccgaacctatggttgaa
gtctcggtatctgaaaatatagtggttgaagagcaacctactaccgtggaacctactcca
gtaagccctgttgtagagaaagcggttgttagcttcaagggccacgcgagtgcaccaatg
gctaaagctgagggcaagcaagaacttggtgaaattatcatcaatgcagcacctattaaa
gctgagcgttaccaacagaagggtgcaggcagccaagtcgcaactaactctgcgtcagca
gtaatgacaaaacctaactactaa
DBGET
integrated database retrieval system