Vibrio vulnificus CMCP6: VV1_0949
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Entry
VV1_0949 CDS
T00108
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
vvu
Vibrio vulnificus CMCP6
Pathway
vvu03420
Nucleotide excision repair
vvu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vvu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
VV1_0949 (uvrD)
03430 Mismatch repair
VV1_0949 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vvu03400
]
VV1_0949 (uvrD)
Enzymes [BR:
vvu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VV1_0949 (uvrD)
DNA repair and recombination proteins [BR:
vvu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
VV1_0949 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
VV1_0949 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
AAA_12
AAA_11
Motif
Other DBs
NCBI-ProteinID:
AAO09444
UniProt:
A0A3Q0L2Y4
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Position
I:complement(955030..957204)
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AA seq
724 aa
AA seq
DB search
MIDPSLLLDGLNDKQREAVAAPLENLLVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMS
VTFTNKAAAEMRGRIEELMMGSASGMWNGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQ
QRLLKRLIKAQNLDDKQWPARQVAWWINGKKDEGLRPAHIDAYHDPVTKTYLQLYTAYQE
ACDRAGLVDFAEILLRAHELLRENKFIREHYQARFKHILVDEFQDTNNIQYAWLRMMAGP
ECHVMIVGDDDQSIYGWRGAKVENIEKFTLEFPSVNTIRLEQNYRSTKTILEASNALIAN
NTERMGKELWTDGVEGEPISIYSAYNELDEARFAVNKIKEWQDKGGVLNDAAMLYRNNAQ
SRVLEEALIQAGLPYRIYGGMRFFERQEIKDALSYLRLIANRNDDAAFERVVNTPTRGLG
DKTLETVRFAARDRGCTLWEASIALIEEKVLTGRAAGALSRFIELITALEDDSFEMPLHI
QTDHVIKSSGLYTMYEQEKGEKSKARIENLEELVTATRQFEKPEEAEEMSLLTAFLTHAA
LEAGEGQADDFEDAVQLMTLHSAKGLEFPLVFMVGVEEGMFPSQMSAEEAGRLEEERRLC
YVGMTRAMQKLYITYAEMRRLYGQDKYHKPSRFIRELPESCLDEVRMKAQVSRPASSGRF
SQTVVKESFNETGFSLGSRVRHPKFGEGTIINFEGSGPQSRVQVAFNGEGIKWLVTAYAR
LEKL
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgatcgatccttcacttcttctcgatggcttgaacgacaaacagcgtgaggctgttgct
gcacctttggaaaacttgctggtgttggcaggcgcaggcagtggtaaaacgcgcgttctt
gtgcatcgcattgcttggctaatgtcagtcgagcaggcttctccgttttctattatgtct
gtgacctttaccaataaggcggcggcggagatgcgtggtcgaatcgaagagttgatgatg
ggcagtgcgtcgggcatgtggaatggcaccttccacggtatttgccaccgaattctcaga
gcgcactatctggatgccaagctgccggaagatttccaaattattgatagcgacgaccaa
caacgtttgcttaagcgactgatcaaagcgcaaaacctggatgacaaacagtggccagcg
cgccaagtcgcttggtggatcaatggcaaaaaagacgaaggattacgccctgcgcacatc
gatgcctaccacgatcccgtgaccaaaacctacctacagttgtacaccgcctatcaagaa
gcgtgtgatcgcgcaggcttggtcgactttgcggagatcttgctgcgtgcgcatgagcta
ctgcgtgagaacaaatttatccgcgaacactatcaagcgcgctttaaacacatcttggtg
gacgagttccaagacaccaacaacattcaatacgcttggctgcgtatgatggcggggcct
gaatgccatgtgatgatcgtcggtgatgatgaccagtcgatttacggttggcgtggcgcg
aaagtggaaaacatcgaaaagttcacccttgagtttccgagcgtcaacaccattcgcctc
gagcaaaactaccgttcgaccaaaaccatcctagaagcctcaaacgccttgattgccaac
aataccgagcgtatgggcaaagagctgtggaccgatggcgtcgaaggtgaaccgatctcg
atttattctgcttacaacgaattggatgaagcgcgttttgcggtgaacaaaatcaaagag
tggcaggacaaaggcggcgtgttgaacgacgcagcgatgctttatcgcaataacgcccag
tcgcgtgtactggaagaagcgttgattcaagcgggtttgccttatcgcatttacggcggg
atgcgattcttcgagcgccaagagatcaaagatgcattgagctatctgcgcctcatcgcc
aaccgcaatgacgacgcggcctttgaacgtgtggttaatactccaacgcgtggcttaggg
gacaaaaccttggaaacggtgcgttttgccgcgcgcgatcgtggctgcaccttgtgggaa
gccagtatcgctttgatcgaagaaaaagtgttaacggggcgtgctgctggtgcgttaagt
cgctttatcgagctgatcacggcgctggaagacgacagctttgaaatgccactgcacatt
caaaccgaccatgtgatcaaatcctcaggcttgtacaccatgtatgagcaagagaaaggc
gagaagtccaaggctcgcattgagaacttggaagagttggtcacggcgacacgtcagttt
gaaaaaccggaagaagccgaagagatgagtttgctcactgctttcttaacccatgccgct
ttggaggcgggtgaaggtcaagcggacgatttcgaagatgcggtacaactgatgacctta
cacagcgccaaaggattggagttcccattggtgtttatggtgggcgtggaagaaggcatg
ttcccgagccagatgtccgccgaagaagcgggccgcttagaagaagagcgccgtttgtgc
tacgtgggcatgactcgggcaatgcagaagctctatattacctacgctgaaatgcgtcgt
ttgtacgggcaagacaaatatcataaaccatcacgttttatccgagagctgccggaaagc
tgcttggatgaagtgcgcatgaaagcgcaagtcagccgtcctgccagcagtggtcgcttt
agccaaactgtggtcaaagagagcttcaatgaaacgggcttttcgctcggctctcgtgtg
cgtcacccaaagtttggtgaagggacgatcatcaactttgaaggcagtgggccacaaagt
cgagttcaagtggccttcaatggggaaggaatcaagtggctagtgaccgcttacgcgagg
ctggaaaaactgtga
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