Weissella jogaejeotgali: FOL01_0308
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Entry
FOL01_0308 CDS
T04632
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
wjo
Weissella jogaejeotgali
Pathway
wjo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
wjo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FOL01_0308
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
wjo03019
]
FOL01_0308
03009 Ribosome biogenesis [BR:
wjo03009
]
FOL01_0308
Enzymes [BR:
wjo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FOL01_0308
Messenger RNA biogenesis [BR:
wjo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FOL01_0308
Ribosome biogenesis [BR:
wjo03009
]
Prokaryotic type
rRNA helicases
FOL01_0308
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Helicase_RecD
AAA_19
AAA_22
GRP
Motif
Other DBs
NCBI-ProteinID:
APS41167
UniProt:
A0A1L6R9E5
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All DBs
Position
329914..331452
Genome browser
AA seq
512 aa
AA seq
DB search
MKFSELGLTKDLLTAIEKHGYVEATPIQEETIPLTMAGKDVIGQAQTGTGKTAAFGLPIL
EMIDNENKDVQALVVSPTRELAIQTQEELFKLGHDKHVRVQAVFGGSDIRRQINGLKHGA
QIVVGTPGRLIDHIRRGTINLSHVKTLVLDEADEMLNMGFLEDIESILKAVPDERQTLLF
SATMPAAIKRIGVQFMTNPEHIQIAAKELTTDLVDQYYVRVRDFEKFDVLTRILDVQQPK
LAIMFGRTKRRVDELTRGLELRGFNAAGIHGDLTQQKRTQVLKQFKHGEIQILVATDVAA
RGLDVSGVDYVYNFDIPQDSESYVHRIGRTGRAGAHGNSVTFVSNSEMDYLKDIEKLTKK
RMQPLKPYTREEALAGRMNVAADSVADIVKSTAGVANSEQVDKLVEQYDAQELAAALLGA
VANVEQMDADFKLSHERPLPHKHGNFRGGRRGGGRRGGGDHHRGGGYRGNRGQRERRSYD
RGSRNGSGDRSQRGHSGSSRRQSRNFVIKNND
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
ttgaagttttcagagttaggtcttacgaaagacctgttaacggccattgaaaagcatggc
tatgtagaagcaacgccaatccaggaagaaacaattcccttgactatggctggtaaagac
gttattggtcaagcacaaacgggaactggaaaaacagcggcgtttgggttgccaatctta
gagatgattgacaatgaaaataaagatgtgcaagcattggttgtctcaccaacccgtgaa
ttagccatccaaacacaagaagaattatttaaattaggtcatgataagcacgtccgtgta
caggctgtctttggtggttcagatattcgtcgccaaattaatggtttgaaacatggtgct
caaattgttgttggaacacctggtcgtttaattgaccatatccgtcgtggcacaattaat
ttatcacatgttaagacattggttttggatgaagctgatgaaatgttgaacatgggattc
ttagaagatattgaatcaattttgaaggccgttcctgatgagcgtcaaacattgttgttc
tcagcaacaatgcctgcagcaatcaagcgtattggtgtgcaatttatgactaatcctgag
cacattcaaattgctgctaaggaattgacaaccgacttagttgaccaatattacgtacgc
gtacgtgattttgaaaaatttgatgtgctaactcgtattttggatgtacaacaaccaaag
ctagcaattatgtttggtcgtacaaagcgccgtgtcgatgaattgacacgtggtttggaa
ctacgtggctttaatgctgctggtatccatggtgacttaacacaacaaaagcgtacccaa
gttttgaagcaattcaagcatggtgaaattcaaattttggttgcaactgatgttgctgct
cgtggactagatgtttctggtgttgattacgtttacaactttgatattccacaggattca
gaatcatatgtccaccgtattggtcgtactggtcgtgccggtgctcatggtaattctgta
acctttgtaagtaattcagagatggattacttaaaggatatcgaaaagctaactaagaag
cgtatgcaaccattaaagccttatactcgtgaagaggctttggctggtcgtatgaacgta
gcagctgattcagtagccgacattgttaagtcaactgctggtgttgctaattcagaacaa
gttgacaaattagttgagcaatatgatgcccaagaattagcggctgccttgttaggtgct
gttgctaatgttgagcagatggatgctgactttaagttgtctcatgaacgtccattacca
cacaagcatggtaacttccgtggtggacgtcgtggtggcggacgccgtggtggtggtgac
catcatcgtggtggtggttatcgtggtaaccgtggtcaacgcgagcgtcgttcatatgat
cgtggttcacgtaatggttcaggtgatcgctcacaacgtggtcattcaggatcttcacgt
cgccaatcacgtaattttgtgattaaaaataacgactaa
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