Xanthomonas campestris pv. raphani: XCR_2179
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Entry
XCR_2179 CDS
T01872
Name
(GenBank) putative signal protein with HAMP and GGDEF domains
Organism
xcp
Xanthomonas campestris pv. raphani
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GGDEF
Reg_prop
Y_Y_Y
Alpha-mann_mid
Motif
Other DBs
NCBI-ProteinID:
AEL07064
UniProt:
G0CDH5
LinkDB
All DBs
Position
complement(2259914..2262787)
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AA seq
957 aa
AA seq
DB search
MALLLVLLWLAFAELAGAQTATIRRYAHDQGLLGLAGTCLLQTRNTLLWVCTETGLYRFN
GRNFQQSPLDGLRNEPISSMSEAPDGRLWVAGFQSLFVGDERGFRKLDTTEVNHLQDGVL
LASLPWGTVLANNGTLLRLLPRARERWHSEPLLDTATRVRVPDLSKVLSLSVDGDTLWAG
CGRQLCAIDARRKVQVYGPQQGVPDDRWYSVLRDRAGGLWARGVGTIVYRAPGAHNFTVR
PLPVLDGRAVGQPAPLVLDRSGRVLVRSHAGLVRWESDHWRSFDAGNGLPQGSSHAVVVD
GEGDVWMSVDGEGLVRWAGYEWIENWDASQGMPLTPTWAITRDAHGALLVGNEHGVGRQA
VPHGRFAPALPGSGIQVVSMVRSADGSVWTLNSAGAVRRDWPDGRSAQVGKLPRTGRRLL
LDRQGRLWALSVAGLFVIDTALEGGPLHRVADLPAIAYTDVQQSGDGSVWVSSANGLFRL
QGAHWRKIPIRVNGAPGEPWVSKFHVTDSGEVWLAFYRPGVWHGVLQPSGLDLQAVSDEA
LGEAGVYLLREDSAGRIWVGHASGVEVYDGQRWSHLSQSQGLLWDDVSEAAFLEEPDGSV
WIGTARGVSHVRTPARLFDQQQPSVRIDSVTRGGVPVQRGQLLAWNDKPLHLALSSLQVY
DDPSRLSVRYRLLGLHDEWIQTNDLAIDQPPLPSGHFRLQVQVLDRYRRTASPIVDWPFA
VAPLWWRSPPAIALYVLMGAAVLAGLWRWRHRHLVARERMLAELVAERTYQLEREKRELE
TARAALALKASHDALTGLLNRSGVLEAMAEELQQCASAGHPLAVVLIDLDHFKLVNDEHG
HLVGDAVLAQVGARLTNCLRDSDKVGRYGGEELLLLLPGMTQQSQHRLRAIHEAIGATPY
EVGISRPLRVTCSVGVAWFRSGDSTPTLLARADEALYRAKGQGRNRIEPETPACSVA
NT seq
2874 nt
NT seq
+upstream
nt +downstream
nt
gtggcgctgctgttggtactgctgtggctggcgtttgccgaactcgccggtgcgcagacc
gccaccatccgtcgctacgcgcacgatcaaggcctgctcgggctggccggcacctgcctg
ctgcagacccgcaacacattgctgtgggtgtgtacggaaaccgggctgtatcgcttcaat
ggccgcaattttcagcagtcgccactggatggcctgcgcaacgaacccatttcgtcgatg
agcgaagcgcccgacgggcgcttgtgggtggccggtttccagagcctgttcgtcggcgac
gagcgcggctttcgcaagctcgacaccactgaagtcaaccacctgcaagacggcgtgctg
ctggccagcctgccgtggggcaccgtgctggccaataacggcaccctgctgcgcctgttg
ccacgtgcgcgcgaacgctggcatagcgaaccgctgctggacaccgccacccgggtgcgc
gtgccggacctgtccaaggtgctgagcctgtcggtggatggcgacaccttgtgggccggc
tgcgggcgccagctgtgtgcgatcgatgcgcggcgcaaggtgcaggtctacggcccgcag
caaggcgtgccggatgaccgttggtacagcgtgttgcgcgaccgcgcaggtgggctgtgg
gcccgcggcgtgggcacgatcgtgtaccgcgcaccgggcgcacacaacttcacggtacgg
ccactgccggtgctcgatggccgcgccgtcggccagccagcgccactggtgctggaccgc
agcggccgcgtgctggtgcgcagccacgccgggctggtgcgctgggagtccgaccactgg
cgcagtttcgatgccggcaacgggctgccgcagggcagcagccacgcggtggtggtcgac
ggcgaaggcgatgtgtggatgagcgtcgatggcgaaggcctggtgcgctgggccggctac
gaatggatcgaaaactgggacgcctcgcaaggcatgccactgacaccgacctgggcgatc
acccgcgacgcgcacggcgcattgctggtcggcaacgaacacggcgttggccggcaggcc
gtgccgcatggccgctttgcgccggcgctgccgggttcgggcatccaggtggtgagcatg
gtgcgctctgccgatggcagtgtgtggaccctcaattccgccggcgcggtgcggcgcgac
tggccggatgggcgcagcgcccaggtcggcaagctgccgcgcaccgggcgccgcctgctg
ctcgaccgccaggggcggctctgggcgctgagcgtggccgggctgttcgtcatcgacacg
gccctggagggcggccccctgcaccgggtggccgacttgccggcgatcgcctacaccgat
gtccagcaaagcggcgacggcagtgtgtgggtgtccagcgccaatggcctgttccgcctg
cagggagcgcactggcgcaagattccgatccgcgtcaacggcgcgccgggcgagccctgg
gtgagcaaattccacgtcaccgacagcggcgaagtctggctggcgttctatcgccccggc
gtgtggcatggcgtgttgcagccctccgggctggacctgcaggcggtcagcgacgaagcg
ctgggcgaagcgggcgtatacctgctgcgcgaggacagcgccgggcggatctgggtcggc
cacgccagcggcgtggaggtctacgacggccagcgctggtcgcatctgtcgcaatcgcaa
ggcctgctctgggacgatgtctccgaagccgcattcctggaagagcccgatgggtcggtg
tggatcggcaccgcgcgtggtgtcagccatgtgcgcacgccggcgcggctgttcgaccag
cagcagcccagcgtgcgtatcgacagcgtcacccgtggcggtgtgccggtgcagcgcggc
cagctgctggcctggaacgacaagcccctgcatctggcgttgtccagcctgcaggtctac
gacgaccccagccgtctgagcgtgcgttatcgcctgctcggcctgcacgacgaatggatc
cagaccaacgacctggccatcgaccagccaccgctgccctcgggccatttccgcctgcag
gtgcaggtgctcgaccgctaccggcgcaccgcctcgcccatcgtcgactggccgtttgcg
gtggcaccgctgtggtggcgcagcccgccggccatcgcgttgtatgtgctgatgggcgct
gccgtgctggctggcctgtggcgctggcgtcaccgccatctggtggcgcgcgaacgcatg
ctggccgagctggtggccgaacggacctaccaactcgagcgcgagaaacgcgaactggaa
accgcacgcgccgcgctggccttgaaggccagccatgacgcgctgaccggcctgctcaac
cgctccggcgtgctggaggccatggccgaagaactgcagcagtgcgccagcgccggtcac
ccgttggcggtggtgctgatcgatctggaccacttcaaactggtcaacgacgaacacggg
cacctggtgggcgacgccgtgctggcgcaggtcggcgcgcggctcaccaactgcctgcgc
gactccgacaaggtgggccgttacggcggcgaagaactgctgctgttgctgccgggcatg
acccaacagagccagcaccgcctgcgcgccatccatgaggcgatcggcgccacgccctac
gaggtcggtatttcgcggccgttgcgcgtcacctgctcggtcggtgtggcctggttccgc
agcggcgacagcaccccgaccctgctggcccgtgccgacgaggcgctgtatcgcgccaag
ggccaggggcgcaaccggatcgaaccggaaaccccggcctgctcggttgcatga
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