KEGG   Xanthomonas campestris pv. vesicatoria: XCV2612Help
Entry
XCV2612           CDS       T00288                                 

Gene name
lig3
Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  
bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
xcv  Xanthomonas campestris pv. vesicatoria
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:xcv00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    XCV2612 (lig3)
Enzymes [BR:xcv01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     XCV2612 (lig3)
DNA repair and recombination proteins [BR:xcv03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     XCV2612 (lig3)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
UniProt: 
LinkDB All DBs
Position
complement(2945662..2948280)
Genome map
AA seq 872 aa AA seqDB search
MSLSEYRRKRSFNKTREPEPGKALPPGQRAIFVVQLHHASRRHYDFRLQVGDALKSWAVP
KGPSYDPKVKRMAVEVEDHPVDYASFEGEIPKGEYGGGHVAQFDHGVWATAGDPEAQLAK
GHLRFELFGNKLKGGWHLVRSGKPARQPQWLLFKDDDAYAVTLEADDLLADVAAAPAEDV
RRAGAGKTQRKALTTVPPLAAKRRGTWAKQALALSNARRAQMEDAPFAPQLAKLGQSPPE
GAQWLHEIKWDGYRILATVTDGNVRLWSRNALEWTDKTPEIADAIRSLGLRSAQLDGELI
AGRGTKDDFNLLQATLSGERQVPLALAVFDLLHVDGVDISEAPLRERKRLLQQVLEAAPH
THLAYSSHVEGDGTEAFRVAGQQHFEGIISKRADRPYRDGRSDDWRKTKQLASQEYAVVG
YTAPKGSRSGFGSLLLATPDPVHGWLYVGRVGSGFSDALMREVTPQLEGGGRKPTAHIPT
EDTDLRGATWFAPRFVVEVFYRGIGGQQLLRQASFKALRPDKRIADLADSDAGNGPATPS
SARRSATTRAAKDAATQVPKRAATRATAPARKSAVATPSSAALPTLSSPTKLIYPDIRAT
KGDVWDYYQAVMDHLLPQIVGRPLSIIRCPSGAEKPCFFQKHHTAGLERVSSVKLTEETG
TNAYYLVVEDAPGLLELVQFNALEFHPWGSHADRPDVADRVVFDLDPGPDVPFAEVKRAA
NDIRKLLAQLELESFLRVSGGKGLHVVVPLNPGCDWEVTKRFAKGFADALAQAQPQRFIA
TATKRLRNKRIFVDYLRNGRGATAVASYSLRGRPGAPVALPLAWSDLSKLQRADAFTLRD
VPEKLRRRRKDPWADMDGIRQNLARWAEQDQD
NT seq 2619 nt NT seq  +upstreamnt  +downstreamnt
atgagcctgagcgaatatcgccgcaagcgcagcttcaacaagacccgcgagccggagccg
ggcaaggccctgccgccggggcagcgtgcgatcttcgtggtgcaactgcaccacgccagc
cgccgccattacgactttcgcctgcaggtgggcgatgcgctcaagagctgggcggtgccg
aaggggcccagttacgaccccaaggtcaagcgcatggcagtggaggtggaagaccacccg
gtcgattacgccagtttcgagggcgagattcccaaaggcgaatacggcggcgggcatgtg
gcgcagttcgatcatggcgtatgggccaccgcgggcgaccccgaagcgcagttggccaag
ggacatctgcgctttgagttgttcggcaacaagctcaagggcggctggcatctggtgcgc
tcgggcaagccggcgcggcagccgcagtggctgctgttcaaggacgacgatgcctacgcc
gtcacgttggaggccgatgacctgctggccgacgtcgctgccgcgcctgccgaggatgta
cgccgcgcaggcgccggcaagacccagcgcaaggcgctgacgaccgtaccgccgctggcg
gcgaagaggcgtggtacctgggcaaaacaggcgctggcgctgagcaacgcacgtcgcgcc
cagatggaagatgccccgttcgcaccacagctggccaagctggggcagtccccgccagaa
ggagcgcaatggctgcatgaaatcaaatgggacggttatcgcatcctggccactgtgacc
gacggcaatgtgaggctatggtcgcgcaatgcattggaatggaccgacaagacgccggaa
attgccgatgccatccggtcgctgggcctgcgcagcgcgcagctcgatggcgaactgatc
gccggacgcggcaccaaggacgacttcaacctgctgcaggccaccttgtccggcgaacgc
caggtgccgctggcgctggcggtattcgacctgctgcatgtggacggggtggacatcagc
gaggcgccgctgcgcgaacgcaagcggctgttgcagcaggtgctggaggctgcacctcac
acgcatctggcctatagctcgcacgtcgaaggcgatggcaccgaggcattccgggtggcc
gggcaacagcacttcgaaggcatcatttccaagcgcgcagatcgcccgtatcgcgatggg
cgtagcgacgattggcgcaagaccaagcaactggccagccaggagtatgcggtggtcggc
tacaccgcgcccaagggcagccgcagtggcttcggctcgctgttgctggccacgccggac
ccggtgcatggctggttgtacgtgggccgtgtgggctccgggttctccgatgccttgatg
cgcgaggtcaccccgcaactggaaggtggcgggcgcaaacccaccgcgcatattcccacc
gaagacaccgacctgcgcggcgccacctggtttgcgccgcgctttgtggtggaggtgttc
tatcgcggcattggtgggcaacagttgttgcgccaggcatcgttcaaggcgctgcgcccg
gataagcgcattgccgatctggccgacagcgatgccggaaatggcccggctacaccgtcc
tctgccaggcgttcggcaacaacgcgtgctgccaaagacgcagcaacgcaggtgcccaaa
cgtgcagcgacgcgggcaacagcgcctgcgcgcaaatctgcggttgccacaccttcctcg
gctgcgctgccgacgctgtccagcccgaccaagctgatctacccggatatccgcgcgacc
aagggcgatgtctgggactattaccaggcggtgatggaccacctgttgccgcagatcgtg
ggacggccgctgtccatcatccgctgccccagcggcgcggaaaaaccgtgttttttccag
aagcaccatactgccggcctcgagcgtgtgagctcggtcaagctgaccgaagagaccgga
accaacgcgtattacctggtggtcgaagacgcgcctggcctgctggaactggtgcaattc
aatgcgttggaattccacccctggggctcgcatgcggaccgcccggacgtggccgaccgg
gtggtcttcgatctcgatccgggcccggacgtgccgtttgccgaggtcaaacgcgcggcc
aacgatattcgcaagctgctggcgcagcttgagctggaatcgttcctgcgtgtgtctggc
ggcaaggggctgcacgtggtggtgcccctaaaccccggctgcgattgggaggtgaccaag
cgtttcgccaagggatttgccgatgccctggcgcaggcgcagccgcagcggttcatcgcc
actgccaccaagcggctgcgcaacaagcgcatcttcgtggactacctgcgcaacggccgt
ggcgccactgcggttgcgtcctattcgttacgcggccgcccgggggcgccagtcgcgttg
ccgctggcgtggtcggacctgtccaagctgcagcgcgccgatgcattcaccttgcgcgat
gtcccggagaagctgcgccgtcggcgcaaggacccctgggcagacatggacggcatccgg
caaaacctggcgcgctgggcagaacaggaccaggactga

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