Xylella fastidiosa M12: Xfasm12_0174
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Entry
Xfasm12_0174 CDS
T00677
Name
(GenBank) DNA-directed DNA polymerase
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
xfm
Xylella fastidiosa M12
Pathway
xfm03030
DNA replication
xfm03430
Mismatch repair
xfm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xfm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Xfasm12_0174
03430 Mismatch repair
Xfasm12_0174
03440 Homologous recombination
Xfasm12_0174
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
xfm03032
]
Xfasm12_0174
03400 DNA repair and recombination proteins [BR:
xfm03400
]
Xfasm12_0174
Enzymes [BR:
xfm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Xfasm12_0174
DNA replication proteins [BR:
xfm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Xfasm12_0174
DNA repair and recombination proteins [BR:
xfm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Xfasm12_0174
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HROB
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
ACA11210
LinkDB
All DBs
Position
complement(207927..211508)
Genome browser
AA seq
1193 aa
AA seq
DB search
MSTSSFVHLHIHTEFSLADSTIRVPEKPEQAHPKKAKQANLLSRAVELGLPALAVTDLNN
LFALIKFYKAAETVGIKPISGADLLIAEPEHTPWGMTLLCRDHAGYLNLSQLISRGWLEG
HRPEGGVAVHPDWVRDHHKNLFALIGRHSLVGQLFAKGRADLAEQQLADWQRVFGDGLHL
ELTRTGRDGEEPFNQFALQVAGIRGIPVIASNDVRFLVPSDFLAHEARVCIASGRMLDDP
KRPRTYSEQQYLRSSEEMAALFTDIPDALDNTRTLAQRCNIEMRLGTYFLPNYPVPNDET
LDSWIRKQSHEGLEARLLKHPLAPGQTREDYVTRLEFELDTIIKMGFSGYFLIVADFIQW
GKQQGIPIGPGRGSGAGSLVAWALLITDLDPLPYNLLFERFLNPERVSMPDFDIDFCMER
RDEVISYVARKYGRERVSQIITYGTMAAKAVVRDVGRVLGFPYGLVDSVAKLIPSTLGIT
LKDAMGEGETNDNASAELIQRYQAEEDVQELLNLARQLEDLTRNAGKHAGGVVIAPNPLT
EFCPLFAEHDENGRGKNPVTQFDKNDVEEVGLVKFDFLGLRTLTIIDWAVKAINKRHARA
CIDPVDITALPLDDLPTYKDIFASGNTSAVFQFESSGMRRLLKDARPDRFEDLIALVSLY
RPGPMDLIPEFTARKHGVQETIYPDPRTKNILKDTYGIMVYQEQVMQMAQIVGGYSLGSA
DLLRRAMGKKVPAEMAKHREIFREGAAKGGMDAVKADEIFDLMEKFAGYGFNKSHAAAYA
LVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEARNLNLKVLRPNINHSAYMFEA
THADTIQYGLGAIKGVGQSVCEAIVKERLHYGPYTSLLDFCTRVTSAKLNRRALEAMIHA
GALDELGKNRASVMLQLPEVIKATEQMSRERESGQNSLFGNADPGTPAIQLDLPECEEWP
LTRMLNGERETLGLYFSGHPFDPYRKQVKELVGCDLNTSALERILSSQQRGNGEKRTWQP
EVNTILAGLVVSMRRKGDSQVFVQLEDGRGRIECSAFSDALAEFGHLLTRDRILIVKGGL
REDEFNGGYSLRIRQCWDYAQLCTDYAQRLLLRVDLRTSHAWERIDAILARYRPGNTPLR
LDLLLNSTHGPVAGTLDLSGGQSVRIEQSLLDKLQKDPAVSTLKVKYTPPWVQ
NT seq
3582 nt
NT seq
+upstream
nt +downstream
nt
atgtccacgtcttcatttgttcatctccatattcacactgaattctcgttagcggattca
acgattcgcgtgcccgagaaaccagaacaggctcacccgaaaaaggccaaacaagccaac
ctactcagcagagccgttgaactcggactgccagcgctggcagtaacggatctgaacaac
ctgttcgcactgattaagttctataaggccgctgaaaccgtcggcattaagccgatcagc
ggtgctgatctcctcatcgccgaaccagagcacaccccgtggggaatgacattgctgtgt
cgggatcacgctggctacctgaatctatcgcaactgatcagccgcggttggctggaaggt
caccgccctgaaggaggagtggccgtgcacccggactgggtccgtgaccaccacaaaaat
ctatttgccctaatcggacgtcacagcctggtcggacagctgttcgccaaaggtcgcgct
gatctggccgaacagcaactggcggactggcaacgcgtattcggtgacggcttgcacttg
gagctcacacgcactggacgcgatggcgaagaaccattcaatcaatttgcactccaagtc
gctggcatccgcggcataccggtgattgccagcaacgacgttcgcttcctggtaccaagc
gactttctggcacacgaggcgcgcgtctgtatcgcatctggacgcatgcttgatgatccc
aagcgaccacgcacttacagcgaacaacagtatctgcgttcctccgaagagatggcagca
ctctttactgacatcccagacgccttggacaacacccgcaccctggcacaacgctgcaat
atcgagatgcggctggggacctatttcttacctaactaccccgttcccaacgacgaaacg
ttggacagttggatccgcaaacagtcgcatgaaggtctggaagcacgcctactgaaacat
ccattagcaccagggcagacacgcgaagactacgtgacccgtctggaatttgaactggac
accatcatcaagatggggttctccggttacttcctcatcgtggccgacttcattcaatgg
ggtaaacaacagggcatccccatcggcccgggacgcggctctggtgccggctcactggtc
gcgtgggcgttactgattactgacctggaccctctgccatacaacttgttgtttgaacgc
tttcttaatcccgaacgcgtatcaatgccggatttcgacatcgacttttgtatggaacgc
cgtgatgaggtcattagctacgtcgcacgcaaatacggtcgcgaacgggtcagtcaaatc
attacctacggcaccatggctgcgaaagcagtggtgcgcgacgtcggccgcgtattgggt
ttcccatatggcttggtcgacagcgtcgctaagctgatcccgagcacccttggcatcacc
ctgaaagatgcgatgggcgaaggcgagaccaacgacaacgcctcagcagaactgatacaa
cgctatcaagccgaggaggacgtacaggaactgctcaacctggcacgtcaactggaagat
ctgacccgcaatgctggcaagcacgccggcggtgtcgtgatcgcaccgaacccactcact
gaattctgcccactctttgcagaacacgacgaaaacggacgcgggaagaaccccgtcacc
caattcgacaaaaacgacgtggaagaagtcggcttagtgaaattcgacttcctcggccta
cgcacactcaccatcattgattgggcggtcaaggcaatcaacaaacgccacgcccgcgcc
tgtattgatccggtggacatcaccgcacttccactggacgacctcccaacttacaaagac
atttttgcatcagggaacacgagcgcagtattccaatttgaatcctcgggcatgcgccgc
ctcctcaaagatgcacgcccagaccgcttcgaagatctcatcgcactggtgtcactgtat
cgaccaggccctatggacttgatcccggaattcaccgcgcgcaagcacggagtgcaagag
accatctatcccgacccgcgtacgaagaacattcttaaagacacctacgggatcatggtg
taccaggaacaagtgatgcaaatggcccagattgtcggcggttactcgctgggcagcgct
gacctgctacgtcgcgcaatgggtaaaaaagtacctgccgagatggccaagcaccgcgag
atcttccgcgagggtgccgccaaaggtggcatggacgcggtcaaagccgatgaaatcttc
gacctcatggagaaatttgccggctatggttttaataaatcccacgcagctgcatacgcg
ctggtcagctatcaaaccgcttggctcaagcgccattatcctgctgaattcatggcagcc
acgctgtcctcagacatggacaacaccgacaaagtcgtcggcttcctcgacgaggcacgt
aacctcaatctgaaggtgctgcgaccaaacatcaatcactcagcctacatgttcgaggca
actcacgccgacacaatccaatacggcctgggcgctattaaaggtgtcggccaaagcgtc
tgcgaggcaatcgtcaaagaaaggttgcactacggtccgtatacgtcactgctcgatttc
tgtacccgggtcacctcagccaaactcaaccgacgtgcactcgaagcaatgatccatgct
ggcgcactggacgagctaggtaaaaatcgcgcctcggtcatgctgcaactgccagaagtc
atcaaagcaacggaacaaatgtccagagaacgcgagtccgggcaaaactcgcttttcggc
aacgcagaccccggcacaccagccatccaattagatcttccagaatgcgaagaatggccg
ctaacacgcatgttgaacggagaacgggagacgctgggcctttatttcagcggccaccca
ttcgacccataccgtaagcaagtgaaggaacttgttggttgcgatctaaacaccagtgcg
cttgaaagaatcctgagttcccaacaacgcggcaacggtgaaaagcgtacttggcagcca
gaggtgaacaccattctcgcaggattggtcgtcagtatgcgccgtaagggagacagccaa
gtatttgtacaacttgaagacggacgcggtcgaattgaatgcagtgcgttctccgacgcc
ctggcagagttcggccacctgttgacccgtgaccgcatactgattgtcaaaggtggtctg
cgagaagatgaattcaacggcggctacagcctacggatccgtcaatgctgggattacgcg
caactctgtacagactatgcgcaacgcttgttgctacgcgtggacctacgcacctctcac
gcatgggaaagaatcgatgccatcctggcacgctatcgccccggcaacaccccattacgt
ctcgatctgttgctgaattcaacccacggccccgtcgccggcacgctcgacttgagtggc
ggccaatctgtacgtatcgaacaatcactcttggataaactgcaaaaagatcccgccgta
tctacgcttaaggtcaaatacacgccaccttgggtgcaatga
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