Xylella fastidiosa M23: XfasM23_0396
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Entry
XfasM23_0396 CDS
T00692
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
xfn
Xylella fastidiosa M23
Pathway
xfn03410
Base excision repair
xfn03430
Mismatch repair
xfn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
xfn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
XfasM23_0396
03430 Mismatch repair
XfasM23_0396
03440 Homologous recombination
XfasM23_0396
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
xfn03400
]
XfasM23_0396
DNA repair and recombination proteins [BR:
xfn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
XfasM23_0396
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
XfasM23_0396
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
XfasM23_0396
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHHA1
DHH
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
ACB91844
UniProt:
B2I846
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All DBs
Position
490418..492226
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AA seq
602 aa
AA seq
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MPKIIRRLSLPLVVWPDNVPPLLRRVYTARGCADPVTAQPCLAQLLSPAMLSNMQAATVL
LTEVIKANGRILVVGDFDCDGATACAVAVRGLRLLGARNVMHAVPNRMVHGYGLSSALVE
ELAPLQPALLVTVDHGIACHAGIAAAKARGWKVLVTDHHLPGETLPAADVIVNPNLPGDL
FPSKTLAGVGVIFYVLLALRARLYPAARAECEGQETRIHSSISQKNRPDLTSLLDLVAVG
TVADLVPLDTNNRALVAAGLRRLRRGQGCLGLRALIEVSGRDESQLTATDIGFALSPRLN
AAGRLEDMALGIELLLTEDWTRARAIAAMLEEINAARRVVQQGMSDDAEQAVAQAMAQSG
GVLPMAVCLFDPDWHPGVIGLVASKMKDKMHRPVVALAPAEPGGTVLRGSARSIPGLHIR
DVLVALDSGYPGMIQKFGGHAMAAGLTLDAEVLPVFERVFRAQVEMMVDKNVLQAELYSD
GELAADELDALHARALRLGGPWGQGFPEPLFDGEFEVLQWRVLKERHLKMEVRYSGRHDA
LNAIYFNGWQGDPPARRLRLAYRLVCDDYRGGDAIQLIVEYAEVIECDVLGSQAISSGLL
DP
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
gtgcccaagattattcgccgtctctctttgccgctggttgtttggcctgacaatgtgccg
ccattgctacgacgtgtgtacacggcacgtggttgtgctgatccggtgacggcgcaaccc
tgtctcgctcagttgttgtcacccgccatgctgagcaacatgcaggcagccactgtattg
ctgactgaggtcatcaaggccaatgggcgtattctggttgtcggtgattttgactgcgat
ggtgcaactgcctgtgcggttgcggtgcgtggtttgcgtttgcttggcgcgcgtaacgtg
atgcatgcggtccccaatcgtatggtgcatggttacggtttgtcgtcggcattggttgag
gagttggcaccgttgcagccagcgttgcttgttacggtggatcacggcattgcttgccat
gctggcattgctgctgctaaggcccgcggttggaaggtgttggtgactgatcaccatttg
ccgggtgaaaccttgccagcagccgatgtcattgttaatccgaatctgcctggcgatttg
tttccgagtaaaacgctggcgggtgtcggggtgatcttttatgtactgcttgcgctgcgt
gcgcgtctttatcctgctgctcgtgctgagtgcgaaggtcaagaaacgcgtattcacagt
tctatttctcagaaaaaccgtcctgatttgacgtccttactggatttagttgcggtcggg
acggttgccgacttggtgcctttagatacgaataatcgtgctttggttgctgccggcttg
cgccggttgcgtcgtggtcaagggtgtctcggactacgcgcgttgatcgaggtcagtggc
cgtgatgagtcgcaattgaccgctactgatattggttttgcattgagtccgcgtctgaac
gctgcgggacggttggaggatatggcgttgggcattgaattgttgctcactgaggattgg
actcgcgcgcgtgctatcgcagccatgcttgaggagattaatgccgcacgccgtgtggta
cagcagggtatgagtgacgatgctgagcaggcagtagcgcaagcgatggcgcagtcaggc
ggtgtgttgccaatggcggtgtgcctgttcgatccggactggcatccaggagtgattggt
ttggtcgcgtccaagatgaaggacaaaatgcaccgtccggtggtggctttagcaccggct
gagccgggaggtacagtgttgcgagggtcggcacggtcgatcccaggactgcatatccgc
gatgtattggtggcgctcgacagtggttatcccgggatgattcagaaatttggaggtcat
gcgatggcggccggcttgacactggatgcggaggtgttgccggtgttcgaacgtgtattt
cgtgcccaagttgagatgatggttgataagaatgtgttgcaggctgagttgtatagcgat
ggtgaattggcggccgatgagctggacgcattacatgcgcgggcattgcggctgggtggg
ccatggggacaggggtttccagagccattgtttgatggagagtttgaagtgctgcaatgg
cgtgtcctcaaggagcgtcatttgaaaatggaggtgcgttattcaggacggcatgacgct
ctgaacgctatttatttcaacggctggcagggtgatcctccagcacggcgattgcgtttg
gcatatcggttggtttgcgacgattaccgcggtggtgatgcgattcagttgatcgtggaa
tatgcggaagtgattgaatgtgatgtattgggttcccaagcaatttccagtggcctactt
gatccttag
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