Xenopus laevis (African clawed frog): 414495
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Entry
414495 CDS
T01010
Symbol
rc3h1.L, rc3h1
Name
(RefSeq) roquin-1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
xla
Xenopus laevis (African clawed frog)
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xla03000
]
414495 (rc3h1.L)
04121 Ubiquitin system [BR:
xla04121
]
414495 (rc3h1.L)
Transcription factors [BR:
xla03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
414495 (rc3h1.L)
Ubiquitin system [BR:
xla04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
414495 (rc3h1.L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
Prok-RING_4
zf-CCCH
zf-C3HC4_3
zf-C3HC4
zf-C3HC4_2
FYVE
zf_CCCH_4
zf-CCCH_4
PaaA_PaaC
Baculo_IE-1
Vesi_VP2
zf-RING_4
zf-RING_6
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
414495
NCBI-ProteinID:
NP_001084548
Xenbase:
XB-GENE-5864202
UniProt:
Q6NUC6
LinkDB
All DBs
Position
4L:93355365..93400099
Genome browser
AA seq
1114 aa
AA seq
DB search
MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
IELLPVNSALLQLVGAQVPEQQQITLCGGCGAEDTKHYEEARKCVEELALYLKPLSTARG
VGLNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQ
LSSNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQAS
KTSIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRI
APDQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLE
LLANIDPSPDAPPPTWEQLKDGLVAVKTVVHGLVDYIQNHSKKGTDQQQPPQHSKYKTYM
CRDMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPIGAPDE
GPMDLPPRKPSGLPNGIVPGSSVTQLISRSTDSGFESVLKPVKLDHLSSSAPGSPPELLD
SVPKTSMSALPVNAHPAASRDLPPLPVSKQIQMVPRGSQMYAPPPADTFYQECRGAGPPF
DAAPYAQGVYYPPQSSQCVSRFVRPPPAATEPATAYLDHYTPYLQDRVVSTQYGTPTQQY
QAIVPTQYQPHYDNRRAYPSNAPPYQREELVRASPVPLEMPPAAVSPYVAESRERYQGIE
GYYTHPGQIRPSYHREPYIRLPPQHTAQPHPSLDDLHRRRKEIMAQLEERNVISPPPFAP
SPTLPHSFHPEEYLDEELKIPGNFKGNDYSQYSPWSFDTFGPYIGTKDNKSKDVSAGGNV
EVANVDGKSLRDQRIELQRRATEPGEDDLIPFGDRPTVSRFGAISRTSKALYQPPGPMQQ
AMAAHGAAKSSITDYSLYSSHSGLSGPSYPTHQNLPSQGHLSERERLSKPLPTSEREQLR
MELQQVNQQISQQAQMRDMEVATNRLLLREASSLGNQQQPPPQQPPAKWPSKVSSKQLSL
ELHQVEREIGKRTRELSLESHSLSMKSKPDTIKVENGQLDDLPLSFSSEVPNGSGLTQDI
TLSKTASLTLSEDPQAGGDKSDLMRSGVNSTAAP
NT seq
3345 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtacaagcaccgcaatggaccgactttctgtcctgccctatttgcacccaaact
tttgacgaaacaatacggaagcccatcagtctaggctgtggacacactgtttgcaagatg
tgcctgaacaagcttcaccgcaaggcttgtccattcgatcagactaccatcaacacagat
attgagcttcttcctgtcaactctgctctcctgcagctagtgggagctcaggtgcctgag
caacaacagatcaccctctgtggcgggtgtggagcagaggacaccaaacattatgaagaa
gctaggaagtgtgtagaagagttagctctgtatttaaagccccttagcactgcaagaggt
gtaggtctaaacagcacaactcaaagtgtgttaagtcgcccaatgcagagaaagctggtg
acactggtgcattgccagttggttgaagaggagggacgtattagagctatgagagcagct
cgttcactgggagagagaacagtcactgagcttatcttgcaacaccaaaatcctcagcaa
ctgtcttccaacctatgggcagctgtccgtgcccgtggctgccagtttctaggaccagcc
atgcaggaagaggcactaaagcttgtcctcctggctctggaagatggatctgcgctctca
cggaaagtccttgttttatttgtggtgcagagacttgaaccacggttcccccaagcctcg
aaaactagcattgggcatgttgtccagctgctttacagagcctcttgctttaaggtaaca
aagcgggatgaagactcctccctaatgcaactaaaggaggaatttcgaacctatgaagca
ctgcgtcgagaacatgattctcagattgttcagattgcaatggaagctggattacgcatt
gctcctgatcagtggtcctccctcctttatggggatcagtcacataaatctcacatgcag
tccatcattgacaagttgcagaccccagcctcgtttgctcagagtgtccaggaactgacc
attgctctacaaaggactggagaccctgcaaatctgaatagacttcggcctcatttggag
ttgttggcaaatatagacccaagtccagatgcccctcctccaacctgggagcagttaaag
gatggtctggtggcagtaaagactgtagtgcatggattagtggattatattcaaaatcat
agcaagaagggaacagaccaacagcagcctccacagcacagcaagtacaagacatacatg
tgtagggacatgaaacagagaggaggctgtccccgtggggcaagttgcacctttgcccat
tctcaagaagagttagaaaagtttcggaaaatgaacaagcgtttggttccaagaaggcca
ctcagtgcctcccttggtcaattaaatgaggttggactacccataggagcacctgatgaa
ggtcctatggacttaccaccccgaaagccaagtgggcttcccaacggcattgtgccagga
agctcagtgacacagctcatctcaaggagtacagactctggctttgagtccgtattgaaa
ccagtaaaattggatcacttaagcagcagtgcacctggatctcccccagaattgctggat
tctgtccccaagacatctatgtctgctttgcctgtcaacgctcatcctgccgcttcacgt
gatttgccaccattaccggtttccaagcagatccaaatggtgccacgaggttcacaaatg
tatgcccctcctccagcagatacattttaccaagaatgtcggggtgctggacccccattt
gatgcagctccctatgcacaaggtgtctattacccccctcagtcctcccagtgtgtttca
cgctttgtcagacctcctcctgctgccactgaaccagccaccgcctacctcgaccactat
actccctacttacaggacagagttgtcagcacccagtatggcactcccactcagcagtac
caggcaattgtacccacccaataccagccgcattatgacaaccgtcgcgcttatccatca
aatgcgccaccttaccaaagggaggagctagtgcgtgccagtccggtgcctctggaaatg
cctcccgctgctgtctcgccctatgttgctgaatccagagagagataccagggcattgaa
ggttattatacacacccaggacaaataaggccttcatatcatagggaaccatatattcgt
ctgcctccccagcacactgctcagcctcaccccagcctggatgaccttcatcgacgtcgc
aaggagatcatggctcagctagaagaaagaaatgttatttcccctccaccctttgcgccc
tcacccactttgcctcacagcttccacccagaagagtaccttgacgaggaattaaaaata
cctggaaattttaaagggaatgattacagtcagtattcaccctggtcctttgacacattc
ggcccctacattggaaccaaagacaacaaatccaaagatgtttcagctggtggcaatgtg
gaagtagctaatgttgacggcaaatccttaagagaccaacgcattgagcttcagcggaga
gctacagagcctggtgaggatgatctaatcccttttggagaccgacccaccgtttctcga
tttggggccatctcccgcacatcgaaggccctgtaccaaccaccaggcccaatgcagcag
gccatggcagcccacggagctgccaaatctagcattacagattacagcttgtacagcagt
cacagtggcttgagtggtccatcatatccaacccatcaaaaccttccttctcagggacat
ttgagtgagcgggaaaggctatccaagcctttaccaacatctgaaagagaacagcttagg
atggaacttcagcaagtgaaccagcagatcagtcagcaggcacaaatgcgtgacatggag
gtagctactaaccgcctgctgttgagagaggcatcttcacttggaaaccagcagcagcca
cccccacaacaaccgccagccaagtggcccagcaaggtgtccagtaaacagctgagcctt
gaacttcatcaagtggaacgggagattgggaagagaacacgtgaactcagcttggagagc
cattctttgagtatgaaaagcaaaccagataccatcaaagtagaaaatgggcagctggat
gacctcccgctatcattcagcagtgaggtgccaaatggatctggcctgacacaggacatc
accttatctaagacagcatctttaactctttcagaagatccccaagctggaggagacaaa
agtgatctgatgagatctggagttaattctactgctgctccttaa
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integrated database retrieval system
