Xenopus tropicalis (tropical clawed frog): 549382
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Entry
549382 CDS
T01011
Symbol
nup50
Name
(RefSeq) nuclear pore complex protein Nup50
KO
K14295
nuclear pore complex protein Nup50
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Pathway
xtr03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
549382 (nup50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xtr03019
]
549382 (nup50)
Messenger RNA biogenesis [BR:
xtr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
549382 (nup50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NUP50
Ran_BP1
Motif
Other DBs
NCBI-GeneID:
549382
NCBI-ProteinID:
NP_001016628
Xenbase:
XB-GENE-970394
UniProt:
Q28ID9
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All DBs
Position
3:3088432..3095808
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AA seq
449 aa
AA seq
DB search
MAKRIADKELTDRNWDQEEEAEDAGTFSVASQEVMKTREIKKAKRRNLGSDGESGGAFKG
FKGLFSGTGASLPSFGNGSSAKPLEGLSNGTSASSTSLFINLKPASESKPTFGSAFTSRP
LLGAADKPLGTASTNGERALSTSGAALSKAGNSEYNKHLTSLNCSVRDWIVKHVNTNPLC
DLSPIFRDYEKHLSAIEQKYGASSDSGSESDGAAQTKTIPTLHSIKADPIATFSFGSKDK
APGVPVKTPPDSKPQAAAPTFNFGQKVDSSTLSLIGSGGAPSFSFSTGASSLFGKSTGST
ASSSQESEPSSNTEGKGDGEEEEEPPKAVIQEVKEDDAFYSKKCKFFYKKDNEFKEKGVG
TLHLKPVENKKTQLLVRADTNLGNILLNILVQPSMPCSRTGKNNVMVVCVPNPPIDEKNP
TVPATLLIRVKTAEDADELHKILLEKKEV
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaacgaatcgcggacaaagagctgacggaccgtaactgggatcaggaagaagaa
gctgaggatgccggaacgttctctgtggcgagtcaggaggttatgaagacgagggagatc
aagaaagcaaagcggagaaacctgggaagcgatggtgaaagtggaggggcttttaaagga
tttaaaggtttattctctggcactggcgcctccctcccctccttcggaaatggctcttcc
gcgaaaccgctggaaggtttgagtaacggaaccagcgcctccagtacctccctgttcatt
aatctgaagccggcctcggaaagcaagcccaccttcggttctgcctttacaagccgcccc
ttactcggcgctgcagataaacctttgggcaccgcgtccaccaatggggagagggctctg
tctacctctggtgccgcgctgagcaaggccggcaactctgagtacaacaagcacctgacg
tcgctgaactgctccgtgcgcgactggatagtgaaacacgtcaacaccaaccccctgtgc
gacctgagccccatattcagggactacgagaagcatctgtctgccatagagcagaagtac
ggggccagctccgacagtggctccgagagcgacggggctgcccaaaccaagaccattcca
acccttcactccattaaagccgaccctatagcgaccttctctttcggaagcaaagacaaa
gcgccgggggtgcccgtcaagacccccccggacagcaagccccaagccgctgcgcccacc
tttaactttggccagaaagttgacagttccactcttagtttaatcggttccggaggggct
ccaagcttctcgttttccacgggcgcgtccagcctcttcggtaaaagcactggcagtacg
gcatcttcctctcaggagtcggaaccaagcagcaacactgaggggaaaggtgatggggag
gaggaagaggaaccccccaaagcagttatacaggaagtaaaagaagacgatgccttctac
tccaaaaagtgcaagttcttctacaaaaaggataatgaatttaaagagaaaggtgtcggc
accctccatctgaagcccgtagagaacaaaaagactcagctcttggtgcgcgccgatacc
aacctgggcaacatactcctgaacatcctggtgcagccgtccatgccgtgctctagaacc
ggcaagaacaacgtcatggtggtgtgcgtccccaacccgcccatcgacgagaagaacccg
accgtccccgccacgctcttaatcagggtgaaaaccgcagaggacgccgacgaactacac
aaaatcctgcttgaaaaaaaagaagtataa
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