KEGG   Xenopus tropicalis (tropical clawed frog): 594927
Entry
594927            CDS       T01011                                 
Symbol
rnf38
Name
(RefSeq) E3 ubiquitin-protein ligase RNF38
  KO
K19041  E3 ubiquitin-protein ligase RNF38/44 [EC:2.3.2.27]
Organism
xtr  Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:xtr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:xtr04121]
    594927 (rnf38)
Enzymes [BR:xtr01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     594927 (rnf38)
Ubiquitin system [BR:xtr04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    594927 (rnf38)
SSDB
Motif
Pfam: zf-RING_2 zf-RING_11 zf-rbx1 zf-C3HC4_2 zf-C3HC4 zf-RING_5 zf-C3HC4_3 zf-ANAPC11 zf-RING_UBOX zf-RING_16 zf-C3H2C3 zf-RING-like
Other DBs
NCBI-GeneID: 594927
NCBI-ProteinID: NP_001025505
Xenbase: XB-GENE-1015605
UniProt: Q28I34 A0A8J0PJJ6
LinkDB
Position
1:109769488..109927364
AA seq 464 aa
MYCNEDSPSPKRQRLSNSVFEYAAASPAPSPPMRPWEMTSNRRPPSARPHQHHFSGERCN
TPARNRRSPPVRRQRGRRERLSRHNSISQDENYHHLSYGQQQAVEEPRAFHPPNVSPRML
HPAAHPPQQNAVMVDIHEQIHQGTVPVSYTVTTVAPHGIPLCTGQHIPACSTQQVPGCSV
VFSGQHLPVCSVPPPMIQACSVQHLPVPYAAFPPLISSDPFLLHPPHLSPHHHAHLPPPG
QFVPFQTQQSRSPLQRIENEVELLGEHLPVGGFTYPPSAHAPTLQPSAPLQFITHDPLHQ
EVSFGVPYPPFMPRRITGRNRYRSQQPIPPPPYHPSLLPYVLSMLPVPPTVGPAFSFELD
VEDGEVENYEALLNLAERLGEAKPRGLTKADIEQLPSYRFNPNNHQSEQTLCVVCMCDFE
SRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADASEVHRDSE
NT seq 1395 nt   +upstreamnt  +downstreamnt
atgtactgtaacgaagacagtcccagccccaagcgacagcgactatctaattcagttttt
gaatacgctgcagcatctcctgccccatctcccccaatgcgaccatgggagatgacatca
aataggcggcctccttcggctcggccccaccagcaccacttctcaggggaaagatgcaac
actcctgcacggaacaggagaagcccacctgtgaggcgtcagagagggagaagggagaga
ctgtctcgtcacaactcaattagccaagatgaaaattatcaccatctctcctatgggcaa
cagcaagcagtagaagagcctcgagccttccacccaccgaatgtatcccctcgcatgctc
cacccagctgcacatccaccacagcaaaatgccgtaatggtagacattcatgagcagatt
caccagggcacagtaccagtctcctacacagtcacaacagtagcaccacatgggattcca
ctttgtacaggacagcacatccctgcttgtagtacacaacaagttcctgggtgttcggtg
gtcttcagtggccagcacctaccagtttgcagtgtgcctccacctatgattcaagcctgt
tcggttcagcatttaccggtgccctatgctgctttcccacccctcatttcaagtgatcca
tttcttttgcatccaccccacctttccccacatcaccacgctcaccttccgcctcctggt
cagtttgttccctttcagacacaacagtcacgttcgccactgcaaaggatagagaatgaa
gtggagttgcttggagagcatctacctgtaggtgggtttacgtacccgccatctgcccat
gctccaacactgcaaccctctgctccactacagttcataacccatgatcctttacaccag
gaagtttcctttggtgttccttatcctccatttatgcctcgaagaataactggacgaaac
agatatcgatcacaacaaccaataccaccaccaccttatcatccaagtcttttaccttat
gtactatcaatgcttccagtgcctcctaccgttggacctgcctttagctttgagttggat
gttgaagatggggaggtggaaaactatgaggcattgctgaatctcgcagaaagactgggt
gaagccaaaccacggggactaacaaaagcagacattgaacaacttccatcctataggttt
aacccaaacaatcaccagtctgagcaaaccttatgtgtagtatgcatgtgtgattttgag
tcaagacaacttcttagagtcctaccgtgtaaccatgaatttcatgccaagtgtgtcgac
aaatggctcaaggcaaatcgtacttgcccaatttgtcgggcagatgcttcagaagtacat
cgtgattccgaatga

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