Xenopus tropicalis (tropical clawed frog): 594927
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Entry
594927 CDS
T01011
Symbol
rnf38
Name
(RefSeq) E3 ubiquitin-protein ligase RNF38
KO
K19041
E3 ubiquitin-protein ligase RNF38/44 [EC:
2.3.2.27
]
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xtr04121
]
594927 (rnf38)
Enzymes [BR:
xtr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
594927 (rnf38)
Ubiquitin system [BR:
xtr04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
594927 (rnf38)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-RING_11
zf-rbx1
zf-C3HC4_2
zf-C3HC4
zf-RING_5
zf-C3HC4_3
zf-ANAPC11
zf-RING_UBOX
zf-RING_16
zf-C3H2C3
zf-RING-like
Motif
Other DBs
NCBI-GeneID:
594927
NCBI-ProteinID:
NP_001025505
Xenbase:
XB-GENE-1015605
UniProt:
Q28I34
A0A8J0PJJ6
LinkDB
All DBs
Position
1:109769488..109927364
Genome browser
AA seq
464 aa
AA seq
DB search
MYCNEDSPSPKRQRLSNSVFEYAAASPAPSPPMRPWEMTSNRRPPSARPHQHHFSGERCN
TPARNRRSPPVRRQRGRRERLSRHNSISQDENYHHLSYGQQQAVEEPRAFHPPNVSPRML
HPAAHPPQQNAVMVDIHEQIHQGTVPVSYTVTTVAPHGIPLCTGQHIPACSTQQVPGCSV
VFSGQHLPVCSVPPPMIQACSVQHLPVPYAAFPPLISSDPFLLHPPHLSPHHHAHLPPPG
QFVPFQTQQSRSPLQRIENEVELLGEHLPVGGFTYPPSAHAPTLQPSAPLQFITHDPLHQ
EVSFGVPYPPFMPRRITGRNRYRSQQPIPPPPYHPSLLPYVLSMLPVPPTVGPAFSFELD
VEDGEVENYEALLNLAERLGEAKPRGLTKADIEQLPSYRFNPNNHQSEQTLCVVCMCDFE
SRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADASEVHRDSE
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgtactgtaacgaagacagtcccagccccaagcgacagcgactatctaattcagttttt
gaatacgctgcagcatctcctgccccatctcccccaatgcgaccatgggagatgacatca
aataggcggcctccttcggctcggccccaccagcaccacttctcaggggaaagatgcaac
actcctgcacggaacaggagaagcccacctgtgaggcgtcagagagggagaagggagaga
ctgtctcgtcacaactcaattagccaagatgaaaattatcaccatctctcctatgggcaa
cagcaagcagtagaagagcctcgagccttccacccaccgaatgtatcccctcgcatgctc
cacccagctgcacatccaccacagcaaaatgccgtaatggtagacattcatgagcagatt
caccagggcacagtaccagtctcctacacagtcacaacagtagcaccacatgggattcca
ctttgtacaggacagcacatccctgcttgtagtacacaacaagttcctgggtgttcggtg
gtcttcagtggccagcacctaccagtttgcagtgtgcctccacctatgattcaagcctgt
tcggttcagcatttaccggtgccctatgctgctttcccacccctcatttcaagtgatcca
tttcttttgcatccaccccacctttccccacatcaccacgctcaccttccgcctcctggt
cagtttgttccctttcagacacaacagtcacgttcgccactgcaaaggatagagaatgaa
gtggagttgcttggagagcatctacctgtaggtgggtttacgtacccgccatctgcccat
gctccaacactgcaaccctctgctccactacagttcataacccatgatcctttacaccag
gaagtttcctttggtgttccttatcctccatttatgcctcgaagaataactggacgaaac
agatatcgatcacaacaaccaataccaccaccaccttatcatccaagtcttttaccttat
gtactatcaatgcttccagtgcctcctaccgttggacctgcctttagctttgagttggat
gttgaagatggggaggtggaaaactatgaggcattgctgaatctcgcagaaagactgggt
gaagccaaaccacggggactaacaaaagcagacattgaacaacttccatcctataggttt
aacccaaacaatcaccagtctgagcaaaccttatgtgtagtatgcatgtgtgattttgag
tcaagacaacttcttagagtcctaccgtgtaaccatgaatttcatgccaagtgtgtcgac
aaatggctcaaggcaaatcgtacttgcccaatttgtcgggcagatgcttcagaagtacat
cgtgattccgaatga
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integrated database retrieval system