Xenopus tropicalis (tropical clawed frog): 780072
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Entry
780072 CDS
T01011
Symbol
shq1
Name
(RefSeq) protein SHQ1 homolog
KO
K14764
protein SHQ1
Organism
xtr
Xenopus tropicalis (tropical clawed frog)
Brite
KEGG Orthology (KO) [BR:
xtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
xtr03009
]
780072 (shq1)
Ribosome biogenesis [BR:
xtr03009
]
Eukaryotic type
Sno RNPs
Box H/ACA snoRNPs
780072 (shq1)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SHQ1
SHQ1-like_CS
Leuk-A4-hydro_C
Sigma70_ner
Motif
Other DBs
NCBI-GeneID:
780072
NCBI-ProteinID:
NP_001072616
Xenbase:
XB-GENE-5820245
UniProt:
Q05B18
LinkDB
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Position
4:139960547..140023487
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AA seq
604 aa
AA seq
DB search
MITPAFDISQDSDFLTIIIKVPYARASEIDIYIEGDDFKFYAKPYFLRLALPGRIVEDGR
QKATYNADDGIITVSVPKETPGQHFEGLDLLTSLLAPRGSKSAKPLVEEIGSSDNVVEEE
EDEFDWQIEQTPFVEPTEEALQSQCTYGFGNLRSGVFRRLQEELNDVIDLRDPDVTPASE
RTRRRLAAEKAKFDPDHYLADLFEEEPVQHLLKYQPWWVAEIHAGCSLSAESQERRVSFS
DKQKEQLRKFTNKSHLLDKKTQQQAYLGLIDLLLAYCYEVRVTEGDQNVESAWNIRKLSS
TLSWFENFTCVKDILVSFGRRVLCYPLYRNFQLVEKAIADTVSLLKLGKAAVLKCLLEIH
AIFQENDPAYILNDLYITDYCIWIQKVKSKKVASLSDCVQSLSISKSDLGFELGELEEAA
RLVQEEETQGQLASSTCLVRPLATVASESSDTDSSTSDTDDSSSETEDSTSEESTSEEEA
DPTDSELQKAIVPGQNSRVQSSLEKAGEEKNKLPAAGKAETTVTEQMKHLAEKMNSAVIL
SEAPVGPPGVQDKSPEKKAGECTAQSAQSTTGTPMTREFLEVTPRLNPLLIVPLSDEDDE
LAEH
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atgataacccctgcatttgacattagtcaagattcagattttcttacaataattatcaag
gttccgtatgccagagcttcagaaattgatatttacatcgaaggcgatgacttcaaattc
tacgccaagccatatttcctgaggctggcactgccaggaaggatcgtagaagatggaaga
caaaaggcaacttacaatgctgatgacggtatcataacagttagtgtaccaaaagaaaca
cctggacagcattttgagggtctggatctgctgacttcccttctggcacctcgaggatca
aagtcagccaagcccctggtagaagaaattgggtcttcagacaatgttgttgaggaggaa
gaagatgaatttgattggcagatagagcaaactcctttcgtggaacccacagaagaggcc
ctccagtcacagtgcacttatggctttggaaacttacggtcaggggtcttcagacggttg
caggaggaattgaatgatgttattgacttaagggatccagacgtcactccggcatcagag
cgcacgcggaggcgtctggcagctgaaaaggcgaagtttgaccctgatcattacctcgct
gatctgtttgaagaggagcctgttcagcatttactgaaatatcagccctggtgggtggct
gagatacatgcaggatgcagtctgtcagcagagagtcaggagagaagagtttccttcagt
gacaaacagaaggagcagctgagaaaattcacaaacaagtcacatttgcttgataagaaa
acgcagcaacaagcctacctggggctgatcgatctcctcctggcctactgctatgaagtc
cgtgtcacagaaggcgaccaaaatgtggaatctgcctggaacataaggaagttaagttca
actctcagctggtttgagaatttcacctgtgtaaaggacatcttggtgtcatttggtcga
cgagttctgtgttatcctctttatcggaacttccagcttgtggaaaaagcaattgcagac
acagtctctctgctgaaactgggtaaggctgctgtcctgaaatgcttgttggaaatccac
gctatattccaagagaatgacccagcatacatcctaaatgacctctacattacagactat
tgcatatggattcagaaagtcaaatctaaaaaggtagcctctctgtcggactgcgtccag
tcgctgagcatttctaaatcagatctggggttcgaactgggggagctcgaagaagccgca
cgtcttgtgcaggaggaagagacgcaggggcagttggcgtcgagcacctgtcttgtccga
ccgctggcgactgtcgcttccgaatcatcagacaccgacagctctacatctgacacagac
gactcctcgtcggaaacagaagactctacatcggaggaatcgacatcagaagaagaagca
gatcctacagacagtgagttgcagaaggctattgtgcctgggcagaatagcagggttcag
agttctctagagaaagcaggcgaggagaaaaacaaactgcccgcagctggaaaagcagag
acgacagtcacggaacagatgaaacatctagctgagaagatgaatagtgcagttattctt
tcagaagcccccgtgggaccacccggcgttcaggacaagtccccagagaagaaagctgga
gaatgcacagcacagtcagcacaaagcactacagggacaccaatgaccagggaattttta
gaggtgacaccgcggctgaatccactgctcattgttcctctctcggatgaggatgatgag
ttagcggaacactga
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