Salipiger sp. CCB-MM3: AYJ57_12445
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Entry
AYJ57_12445 CDS
T04443
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
yan
Salipiger sp. CCB-MM3
Pathway
yan03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
yan00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AYJ57_12445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
yan03400
]
AYJ57_12445
Enzymes [BR:
yan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AYJ57_12445
DNA repair and recombination proteins [BR:
yan03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AYJ57_12445
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
AAA_30
MFD_D3
SecA_DEAD
RecG_dom3_C
AAA_16
Motif
Other DBs
NCBI-ProteinID:
ANT61104
UniProt:
A0A1B1PR73
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All DBs
Position
1:2585090..2588587
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AA seq
1165 aa
AA seq
DB search
MSQSLTQMAGITMGGAPEGFDAKLILAEVEKTGGPVLHIARDDKRLAALREALAFFNPGM
PVVSFPGWDCLPYDRVSPNPDISATRMSTLAGLVHGMPQRYVLLTTLSAAMQRIPAREIL
REAAFAARVGDRIDEAGLRSFLVRMGFSNAPTVHEPGDYAVRGGIIDIFPPGEGGPVRLD
LFGDVLDGARRFDPVSQRTTEKLDLVELAPVSEVILDEAAITRFRQNYRIEFGAAGSDDP
LYEAVSAGRKTQGMEHWLPFFHEKLETLFDYMPGAPVLMDDQITPARIARWDSITDQYET
RRHAMTQKGRIDSVYKPVPPGLLYLDEPGWDAAVGARRVVQFNPLPQASGPGVVDAGGRI
GRSFAPERQQENISLFAALADHVKKQLSEGPVLIASWSEGARERLTGLIEDEGLAEAIPV
MDGTRIGKRGLHLAVWGLEQGFVAPWGDPKSGGKITVISEQDVLGDRLIRAPKKRRKAEN
FLTEAQSLTPGDLVVHVDFGIGRYQGLEVITAAGAAHECLLLEYAEGARLYLPVENIELL
SRYGHDEGLLDKLGGGAWQAKKARLKERIREMADKLIRVAAERALRKAPIIDPPPGAWES
FCARFPYNETDDQMSAIEDVLADMTSGNPMDRLICGDVGFGKTEVAMRAAFVAAMSGVQV
AVIAPTTLLARQHYKSFAERFRGFPLNVAPLSRFVTSGDAAKTRDGISKGTVDIAVGTHA
LLSKNIRFNNLGLLIIDEEQHFGVGHKERLKQLRSDIHVLTLTATPIPRTLQLSLSGVRD
LSIIGTPPVDRLSIRTYVSEFDPVTIREALLREHYRGGQSFFVVPRISDLPEIEEFLREQ
VPEVSFVVAHGQMAAGELDDRMNAFYDGKYDVLLATTIVESGLDIPTANTMVVHRADMFG
LSQLYQIRGRVGRSKTRAYAYLTTKPRTKLTDSAEKRLRVLGSLDTLGAGFTLASQDLDI
RGAGNLLGEEQSGQMRDVGYELYQSMLEEAIAKIKSGQLEGLTDDDGQWAPQINLGVPVL
IPEDYVPDLDVRLGLYRRLSELTTKVELEGFAAELIDRFGKLPKEVNTLMLVVRIKAMCK
RAGIAKLDGGPKGATIQFHNDKFAKPEGLVEFIQAQNGLAKIKDNKIVVRRDWANDVDKI
KGAFAIARDLAEKAGTVKPRKAKKG
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgtcccagtcacttacccagatggccggtatcaccatgggcggcgcgcccgaggggttc
gacgccaagctcatccttgccgaggtcgaaaagaccggcgggcctgtgctgcatatcgcc
cgcgacgacaagcgccttgcggcgctgcgcgaggcgctggccttcttcaaccccggcatg
ccggtggtgagctttccgggctgggactgcctgccctacgacagggtctcgcccaacccc
gatatttcggccacgcgcatgtcgaccctcgcggggctcgtgcatggcatgccgcagcgc
tatgtgctgctgaccacgctctcggcggcgatgcagcgcatcccagcgcgcgagatcctg
cgcgaggcggcctttgccgcgcgggtgggcgaccggatcgacgaggcggggctgcgcagc
ttcctcgtgcgcatgggcttttccaacgcgcctacggtgcatgagccgggcgattacgcg
gtgcgcggcgggatcatcgacatctttccgccgggtgagggcgggccggtgcggctcgac
ctcttcggcgacgtgctggacggcgcgcggcgtttcgatccggtcagccagcgtaccacg
gaaaagctcgatctggtggaactggcgccggtctccgaggtgatcctcgacgaggcggcg
atcacccgcttccggcagaactaccgcatcgagttcggcgctgcgggctcggacgatccg
ctctacgaggcggtcagcgccgggcgcaagacgcaggggatggagcattggctgccgttc
ttccacgaaaagctcgagacgctctttgactatatgcccggcgcgccggtgctgatggac
gatcagatcacccccgcgcgcatcgcccgctgggacagcatcaccgaccaatacgagacg
cgccgccacgcgatgacccaaaagggccgcatcgactcggtctataagccggtgccgccg
gggctgctctatctcgacgagccgggctgggatgccgccgtcggtgcgcgccgcgtggtg
cagttcaacccgctgccgcaggccagcggtccgggtgtggtggacgcgggcgggcgcatc
gggcgcagcttcgcgcccgagcggcagcaggaaaacatcagcctgttcgccgcgctcgcc
gatcacgtgaagaaacagctctccgaagggccggtcttgatcgcctcttggtctgaaggc
gcgcgcgagcgtctcacgggcctcatcgaggacgaggggcttgccgaggcgatcccggtc
atggacggcacccgcatcggcaagcgcgggctgcatctggcggtctgggggctggagcag
ggctttgtcgcgccgtggggcgatcccaagagcggcggcaagatcaccgtgatctcggaa
caggacgtgctgggcgaccggctgatccgcgcgccgaagaaacgccgcaaggccgagaac
ttcctcaccgaagcgcagtcgctcactccgggcgatctggtcgtccatgtggattttggc
atcgggcgctatcaggggctcgaagtgatcaccgccgccggggcggcgcatgaatgcctg
ctgctggaatacgccgagggcgcgcggctttacctgccggtggagaacatcgagctgctg
tcgcgttacggccatgacgaggggctcctcgacaagctcggcggcggcgcgtggcaggcc
aagaaggcgcgcctcaaggaacgcatccgcgagatggccgacaagctcatccgcgtggcg
gctgagcgcgccctgcgcaaggcgccgatcatcgacccgccgcccggcgcgtgggaaagc
ttctgcgcccgctttccctacaatgagaccgacgaccagatgagcgccatcgaggatgtg
ctggccgatatgaccagcggcaacccgatggaccggctgatttgcggcgatgtgggcttc
ggcaagaccgaggtggcgatgcgcgccgctttcgtggccgccatgtccggcgtgcaggtg
gcggtgattgcccccacgacgctgctcgcccgccagcactacaagagctttgccgagcgc
ttccggggcttcccgctcaacgtcgcgccgctgtcgcgcttcgtcacctcgggcgatgcg
gccaagacccgcgacggcatctccaagggcacggtggacatcgccgtgggcacccatgcg
ctgctctcgaaaaacatccgcttcaacaatctcgggctgctgatcatcgacgaagagcag
catttcggcgttggccacaaggagcggctgaaacagctgcgctcggacatccacgtgctg
acgctgaccgcgacgccgatcccgcggacgctgcaactctcgctttcgggcgtgcgcgat
ctgtcgatcatcggcacgccgcccgtggaccggctgtcgatccgcacctatgtctccgag
ttcgatccggtgaccattcgcgaggcgctgctgcgcgagcattaccgcggcggccagagc
ttctttgtggtgccgcgcatttcggatcttcccgaaatagaggaattcctgcgcgaacag
gtgcccgaggtctctttcgtcgtggcgcatggtcagatggcggcgggcgaactcgacgac
cggatgaacgccttctacgacggcaaatacgacgtgctgctggcaacgaccattgtcgag
tcgggcctcgacattcccaccgccaacacgatggtggtgcaccgcgccgatatgttcggc
ctgtcgcagctttatcagatccgtggccgggtcgggcgctccaagacccgcgcctatgcc
tatctgaccaccaagccgcgcaccaagctcaccgacagcgccgaaaagcgcctgcgtgtg
ctaggctcgctcgacacgctgggggccggcttcacgctcgccagccaggacctcgacatc
cgcggcgccggcaacctgctgggcgaggaacaatcgggtcagatgcgcgatgtgggctat
gagctttatcagtcgatgctcgaggaggcgatcgccaagatcaagtcgggccagctcgaa
gggctcaccgacgatgacgggcaatgggctccgcagatcaacctcggtgtgccggtgctg
atccccgaggattatgtgcccgatctcgacgtgcgcctcggcctttaccgccgcctgtct
gagctgaccaccaaggtcgaactcgaaggtttcgccgccgagctgatcgaccgtttcggc
aagctgccgaaagaggtcaacacgttgatgctggtggtgcggatcaaggcgatgtgcaaa
cgcgccgggatcgccaagctcgacggcggccccaagggcgcgacgatccagttccacaac
gacaaattcgccaagcccgaagggctggtggaattcattcaggcgcagaacggtctggcg
aagatcaaggacaataagatcgtcgtccgccgcgactgggccaatgacgtggacaagatc
aagggcgccttcgccatcgcccgtgaccttgcggaaaaggcgggcacggtgaagccgcgc
aaggccaagaaaggctga
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