KEGG   Yersinia enterocolitica (type O 5) YE53/03: YE5303_14931
Entry
YE5303_14931      CDS       T03739                                 
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
yee  Yersinia enterocolitica (type O:5) YE53/03
Pathway
yee03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:yee00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    YE5303_14931 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:yee03400]
    YE5303_14931 (mfd)
Enzymes [BR:yee01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     YE5303_14931 (mfd)
DNA repair and recombination proteins [BR:yee03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      YE5303_14931 (mfd)
SSDB
Motif
Pfam: MFD_D3 TRCF UvrB_inter DEAD Helicase_C CarD_TRCF_RID ResIII UB2H ERCC3_RAD25_C RecG_dom3_C
Other DBs
NCBI-ProteinID: CCQ40198
LinkDB
Position
complement(2024328..2027774)
AA seq 1148 aa
MSQQHRYSLPTRRGDTRQLGQLTGSACAVECAEIIERHDGPVMLITPDMQTALRLRDEIQ
QFSPRPVNTLSDWETLPYDSFSPHQDIISARLSCLYHLPTMERGVIILPINTLMQRVCPH
EFLHGHALVMKKGQHLSRDKLRAQLEQAGYRSVDQVMEHGEFATRGALLDLYPMGSEEPY
RIDFFDDDIDSLRVFDVDTQRTLSEVDQINLLPAHEFPIDKNAIELFRSQWREQFEVRRD
AEHIYQQVSKGIWPAGIEYWQPLFFNQPLPTLFSYLPENTLLINTGSLESSAERFWQDVN
QRYESRRVDPMRPLLAPETLWLRVDSLFSELKEWPRVQFKTEELPTKTANTNLHYQPLPD
LSVQAQQKAPLDNLRRFIESFSGSVVFSVESEGRRETLQDLLARIKISPALISELSQATA
PGHYLMIGASERGFLDTDKQLALICESDLLGERVNRRRQDNRRTINTDTLIRNLAELRPG
QPVVHLEHGVGRYLGLTTLEAGGIKAEYLILTYAGEDKLYVPVSSLHLISRYSGGADENA
PLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKSGFKFKFDREQYQLFCQSFPFE
TTPDQEQAINAVLSDMCRPLAMDRLVCGDVGFGKTEVAMRAAFLAVANNKQVAVLVPTTL
LAQQHFDNFRDRFATWPVRIEMMSRFRSAKEQQVILEQAAEGKVDIIIGTHKLLQSDLRW
QDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIEKATQKLAELVPEARIAI
GHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAYLLTPNPKAMTTDAKKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EDQSGQMTTIGFSLYMELLESAVDALKEGREPSLEDLTSNQTEIEMRMPVLLPEDFIPDV
NVRLSFYKRIASARDETELDELKVELIDRFGKLPDAARYLLHTAELRQQAQRLGIKRIEG
NERGGFIEFGEKNKVDPIYLIGLLQRQPQIFRLEGPTKLKFMQDLSDRAQRLKFISELLA
AFAQHRVA
NT seq 3447 nt   +upstreamnt  +downstreamnt
atgtcccaacaacatcgttattcattgccgacgcgccgtggcgacacccgccagttaggc
cagttgactggttcagcttgcgccgtcgagtgtgcagaaatcattgagcgccatgatggc
ccggtaatgttaattaccccggatatgcaaacggcgctgcgactgcgtgatgaaattcag
cagttttccccccgtccggtgaataccctctccgactgggaaacgctgccttacgacagt
ttctcaccccatcaggatattatttcggcccgcctttcttgtctgtaccaccttccgaca
atggaacgcggtgttattattctcccgattaatactctgatgcaacgggtttgcccgcac
gaattcctgcatggtcatgctctggtgatgaaaaaaggccagcacctgtcgcgagataaa
ttacgcgctcagctcgagcaagcgggatatcgcagcgtcgatcaggtcatggagcacggt
gagtttgctacccgcggggccttgcttgatctgtatccgatgggcagtgaagagccttat
cgcattgacttttttgatgatgacattgatagcttgcgcgtatttgatgtggatacacag
cgcaccctgtccgaagttgatcaaataaacttactccccgcccatgaattcccgatagat
aaaaacgccattgaattattccgcagccaatggcgtgaacagttcgaagtgcgccgcgat
gcggaacatatttaccagcaagtgagcaaaggcatctggcctgccgggattgaatactgg
caaccgctattcttcaaccagccattgccgacactgtttagctacttgcctgaaaatacc
ttattgattaacaccggctcgctggaaagctcagcggagcgtttctggcaagatgttaac
caacgctatgaaagccgtcgtgttgacccaatgcgcccattgctggccccggaaacatta
tggctacgggttgattcacttttcagtgagttaaaagagtggccgcgggttcagttcaag
accgaagaattaccgactaaaaccgccaataccaacttacattatcagccgctgcccgat
ttatccgtacaggcacagcaaaaagcgccactggataatctgcggcgctttattgagtca
ttcagcggtagtgtcgtgttttcggtggaaagtgaggggcgacgcgaaaccctgcaagat
ctgctggcacggataaaaatcagtccagccctgataagcgagctatctcaagccacggca
cccggccattatctgatgattggtgcttcagaacgaggtttccttgatacagataagcaa
ttagcactgatttgcgaaagtgacttactgggcgagcgcgtgaaccgccgtcgccaggat
aatcgccgcaccattaataccgataccttaatccgcaatctggcggaattgcgccccggt
cagccagtggttcatctggagcatggtgtgggccgctatcttggtctcaccacattagaa
gctggcggtattaaagctgaatacctgatattgacctatgccggtgaagataagctgtac
gtgccggtttcatcactgcatcttatcagtcgctattccggcggtgctgacgaaaatgcg
ccgctgcataaactgggtggcgatgcctggagccgtgcgcggcagaaagccgccgagaaa
gtgcgtgatgtggcggctgaactgctggacatctatgcgcagcgcgccgccaaatctggc
tttaaattcaagttcgaccgcgaacagtatcagctgttctgccaaagcttcccgttcgaa
accacaccggatcaggaacaggctatcaatgcggtgctcagcgatatgtgccgaccgctg
gctatggaccgactggtgtgcggcgatgttggtttcggtaaaaccgaagtggcaatgcgg
gcagccttcctggcggtggcgaataataagcaagttgccgtcttggtgccgaccaccctg
ctcgctcaacagcatttcgacaacttccgcgaccgttttgccacctggccggtgcgaatt
gaaatgatgtcacgtttccgcagtgccaaagagcagcaagtgattttggagcaagctgct
gaaggcaaagtcgatattattatcggcacccataaattgctgcaaagtgacctgcgctgg
caagacctcggtctgttgattgtcgatgaggagcatcgcttcggtgtgcgtcataaagaa
cgcattaaagcgatgcgcgccgatgtcgatattctgacacttaccgccacacctatcccg
cgcacacttaatatggcgatgagcggtatgcgggacttatcgattattgcgacgccacct
gcgcgccgtctggcggtgaaaaccttcgtgcgtgagtacgatagcttagtggtgcgagaa
gcgattctgcgcgaaattctacgtggtgggcaggtttattatctctataacgatgtggaa
aatatcgagaaagccactcagaagctggctgagctagtgccagaagcgcgcattgccatt
ggtcacgggcaaatgcgtgagcgagatctggagcgggtgatgaatgatttccatcatcag
cgctttaacgttttggtctgcaccaccattatcgaaacggggattgatattccgagcgcc
aataccattatcatcgaacgcgccgatcattttggtctggcgcagttgcaccagttgcgc
ggtcgggtcgggcgctcccaccatcaggcttatgcttacttgctgacgccaaatccgaaa
gcgatgaccaccgacgccaaaaaacggctggaagctatcgcgtcgctagaagatctcggt
gctggctttgctctggcaactcatgaccttgagattcgtggtgccggtgagctattaggc
gaggaccaaagtggccagatgaccaccatcggtttctcgttatatatggagttactggaa
agcgcggttgatgcgttgaaggaaggtagagagccatcactggaagacttgaccagcaat
cagaccgaaattgaaatgcgtatgccggtattgctgccagaggactttattccagatgtg
aatgtccggctttcgttctataagcgcattgccagtgctcgcgatgaaactgaactcgat
gaattgaaagtcgaacttattgatcgctttggtaaactgccggatgcagcccgttatctg
ttacataccgcagaattacgccaacaggctcagagactgggtatcaaacgtatcgaaggt
aatgagcgcggaggctttatcgagtttggtgagaagaacaaagtcgatccgatttatctg
attggtttgctgcaacgccagccgcaaatattccggctggaagggccaaccaaattgaaa
tttatgcaggatcttagtgaccgtgcgcagcgattgaagtttatcagtgaattactggcc
gcatttgctcagcatcgcgtagcttaa

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