Yersinia enterocolitica (type O 5) YE53/03: YE5303_14931
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Entry
YE5303_14931 CDS
T03739
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
yee
Yersinia enterocolitica (type O:5) YE53/03
Pathway
yee03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
yee00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
YE5303_14931 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
yee03400
]
YE5303_14931 (mfd)
Enzymes [BR:
yee01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
YE5303_14931 (mfd)
DNA repair and recombination proteins [BR:
yee03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
YE5303_14931 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MFD_D3
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
CCQ40198
LinkDB
All DBs
Position
complement(2024328..2027774)
Genome browser
AA seq
1148 aa
AA seq
DB search
MSQQHRYSLPTRRGDTRQLGQLTGSACAVECAEIIERHDGPVMLITPDMQTALRLRDEIQ
QFSPRPVNTLSDWETLPYDSFSPHQDIISARLSCLYHLPTMERGVIILPINTLMQRVCPH
EFLHGHALVMKKGQHLSRDKLRAQLEQAGYRSVDQVMEHGEFATRGALLDLYPMGSEEPY
RIDFFDDDIDSLRVFDVDTQRTLSEVDQINLLPAHEFPIDKNAIELFRSQWREQFEVRRD
AEHIYQQVSKGIWPAGIEYWQPLFFNQPLPTLFSYLPENTLLINTGSLESSAERFWQDVN
QRYESRRVDPMRPLLAPETLWLRVDSLFSELKEWPRVQFKTEELPTKTANTNLHYQPLPD
LSVQAQQKAPLDNLRRFIESFSGSVVFSVESEGRRETLQDLLARIKISPALISELSQATA
PGHYLMIGASERGFLDTDKQLALICESDLLGERVNRRRQDNRRTINTDTLIRNLAELRPG
QPVVHLEHGVGRYLGLTTLEAGGIKAEYLILTYAGEDKLYVPVSSLHLISRYSGGADENA
PLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKSGFKFKFDREQYQLFCQSFPFE
TTPDQEQAINAVLSDMCRPLAMDRLVCGDVGFGKTEVAMRAAFLAVANNKQVAVLVPTTL
LAQQHFDNFRDRFATWPVRIEMMSRFRSAKEQQVILEQAAEGKVDIIIGTHKLLQSDLRW
QDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIEKATQKLAELVPEARIAI
GHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAYLLTPNPKAMTTDAKKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EDQSGQMTTIGFSLYMELLESAVDALKEGREPSLEDLTSNQTEIEMRMPVLLPEDFIPDV
NVRLSFYKRIASARDETELDELKVELIDRFGKLPDAARYLLHTAELRQQAQRLGIKRIEG
NERGGFIEFGEKNKVDPIYLIGLLQRQPQIFRLEGPTKLKFMQDLSDRAQRLKFISELLA
AFAQHRVA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgtcccaacaacatcgttattcattgccgacgcgccgtggcgacacccgccagttaggc
cagttgactggttcagcttgcgccgtcgagtgtgcagaaatcattgagcgccatgatggc
ccggtaatgttaattaccccggatatgcaaacggcgctgcgactgcgtgatgaaattcag
cagttttccccccgtccggtgaataccctctccgactgggaaacgctgccttacgacagt
ttctcaccccatcaggatattatttcggcccgcctttcttgtctgtaccaccttccgaca
atggaacgcggtgttattattctcccgattaatactctgatgcaacgggtttgcccgcac
gaattcctgcatggtcatgctctggtgatgaaaaaaggccagcacctgtcgcgagataaa
ttacgcgctcagctcgagcaagcgggatatcgcagcgtcgatcaggtcatggagcacggt
gagtttgctacccgcggggccttgcttgatctgtatccgatgggcagtgaagagccttat
cgcattgacttttttgatgatgacattgatagcttgcgcgtatttgatgtggatacacag
cgcaccctgtccgaagttgatcaaataaacttactccccgcccatgaattcccgatagat
aaaaacgccattgaattattccgcagccaatggcgtgaacagttcgaagtgcgccgcgat
gcggaacatatttaccagcaagtgagcaaaggcatctggcctgccgggattgaatactgg
caaccgctattcttcaaccagccattgccgacactgtttagctacttgcctgaaaatacc
ttattgattaacaccggctcgctggaaagctcagcggagcgtttctggcaagatgttaac
caacgctatgaaagccgtcgtgttgacccaatgcgcccattgctggccccggaaacatta
tggctacgggttgattcacttttcagtgagttaaaagagtggccgcgggttcagttcaag
accgaagaattaccgactaaaaccgccaataccaacttacattatcagccgctgcccgat
ttatccgtacaggcacagcaaaaagcgccactggataatctgcggcgctttattgagtca
ttcagcggtagtgtcgtgttttcggtggaaagtgaggggcgacgcgaaaccctgcaagat
ctgctggcacggataaaaatcagtccagccctgataagcgagctatctcaagccacggca
cccggccattatctgatgattggtgcttcagaacgaggtttccttgatacagataagcaa
ttagcactgatttgcgaaagtgacttactgggcgagcgcgtgaaccgccgtcgccaggat
aatcgccgcaccattaataccgataccttaatccgcaatctggcggaattgcgccccggt
cagccagtggttcatctggagcatggtgtgggccgctatcttggtctcaccacattagaa
gctggcggtattaaagctgaatacctgatattgacctatgccggtgaagataagctgtac
gtgccggtttcatcactgcatcttatcagtcgctattccggcggtgctgacgaaaatgcg
ccgctgcataaactgggtggcgatgcctggagccgtgcgcggcagaaagccgccgagaaa
gtgcgtgatgtggcggctgaactgctggacatctatgcgcagcgcgccgccaaatctggc
tttaaattcaagttcgaccgcgaacagtatcagctgttctgccaaagcttcccgttcgaa
accacaccggatcaggaacaggctatcaatgcggtgctcagcgatatgtgccgaccgctg
gctatggaccgactggtgtgcggcgatgttggtttcggtaaaaccgaagtggcaatgcgg
gcagccttcctggcggtggcgaataataagcaagttgccgtcttggtgccgaccaccctg
ctcgctcaacagcatttcgacaacttccgcgaccgttttgccacctggccggtgcgaatt
gaaatgatgtcacgtttccgcagtgccaaagagcagcaagtgattttggagcaagctgct
gaaggcaaagtcgatattattatcggcacccataaattgctgcaaagtgacctgcgctgg
caagacctcggtctgttgattgtcgatgaggagcatcgcttcggtgtgcgtcataaagaa
cgcattaaagcgatgcgcgccgatgtcgatattctgacacttaccgccacacctatcccg
cgcacacttaatatggcgatgagcggtatgcgggacttatcgattattgcgacgccacct
gcgcgccgtctggcggtgaaaaccttcgtgcgtgagtacgatagcttagtggtgcgagaa
gcgattctgcgcgaaattctacgtggtgggcaggtttattatctctataacgatgtggaa
aatatcgagaaagccactcagaagctggctgagctagtgccagaagcgcgcattgccatt
ggtcacgggcaaatgcgtgagcgagatctggagcgggtgatgaatgatttccatcatcag
cgctttaacgttttggtctgcaccaccattatcgaaacggggattgatattccgagcgcc
aataccattatcatcgaacgcgccgatcattttggtctggcgcagttgcaccagttgcgc
ggtcgggtcgggcgctcccaccatcaggcttatgcttacttgctgacgccaaatccgaaa
gcgatgaccaccgacgccaaaaaacggctggaagctatcgcgtcgctagaagatctcggt
gctggctttgctctggcaactcatgaccttgagattcgtggtgccggtgagctattaggc
gaggaccaaagtggccagatgaccaccatcggtttctcgttatatatggagttactggaa
agcgcggttgatgcgttgaaggaaggtagagagccatcactggaagacttgaccagcaat
cagaccgaaattgaaatgcgtatgccggtattgctgccagaggactttattccagatgtg
aatgtccggctttcgttctataagcgcattgccagtgctcgcgatgaaactgaactcgat
gaattgaaagtcgaacttattgatcgctttggtaaactgccggatgcagcccgttatctg
ttacataccgcagaattacgccaacaggctcagagactgggtatcaaacgtatcgaaggt
aatgagcgcggaggctttatcgagtttggtgagaagaacaaagtcgatccgatttatctg
attggtttgctgcaacgccagccgcaaatattccggctggaagggccaaccaaattgaaa
tttatgcaggatcttagtgaccgtgcgcagcgattgaagtttatcagtgaattactggcc
gcatttgctcagcatcgcgtagcttaa
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