Yersinia enterocolitica subsp. enterocolitica 8081 (serotype 0 8): YE0424
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Entry
YE0424 CDS
T00469
Symbol
dacB
Name
(GenBank) penicillin-binding protein 4 precursor
KO
K07259
serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:
3.4.16.4
3.4.21.-]
Organism
yen
Yersinia enterocolitica subsp. enterocolitica 8081 (serotype 0:8)
Pathway
yen00550
Peptidoglycan biosynthesis
yen01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
yen00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
YE0424 (dacB)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
yen01002
]
YE0424 (dacB)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
yen01011
]
YE0424 (dacB)
Enzymes [BR:
yen01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
YE0424 (dacB)
Peptidases and inhibitors [BR:
yen01002
]
Serine peptidases
Family S13: D-Ala-D-Ala peptidase C family
YE0424 (dacB)
Peptidoglycan biosynthesis and degradation proteins [BR:
yen01011
]
Peptidoglycan biosynthesis and degradation
DD-Carboxypeptidase/DD-Endopeptidase (Low molecular weight PBP)
YE0424 (dacB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_S13
Beta-lactamase2
Transpeptidase
Motif
Other DBs
NCBI-ProteinID:
CAL10550
UniProt:
A1JIV9
LinkDB
All DBs
Position
complement(492390..493838)
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AA seq
482 aa
AA seq
DB search
MHFSRIVSGLACAIAINISISNANAAQVENYTQYLPDGANLALVVQKIGATTPAIDYHAQ
QMALPASTQKVLTALAALLQLGPDFRFNTTLESHGTISDGILRGNLIARFDGDPTLTRQQ
LRNMVATLRKSGVKQIAGDLIIDTSVFASHDKAPGWPWNDMTQCFSAPPAAAIVDRNCFS
VSLYSAPNPGDMAFIRVASYYPVQMFSEVRTLAKGSPDAQYCELDVVPGELNRFTLTGCL
TQRSEPLPLAFAVQNGASYAGAILKDELKKADIQIDGSLRRQTTPNAAGTVLAQAQSAPL
HDLLKIMLKKSDNMIADTVFRTIGHQRFGVPGTWRAGADAVRQVLRQKAGVDLGNSIVVD
GSGLSRHNLISPATMMQALQYIAQHDQELNFISMLPLSGYDGTLRYRGGLHEAGVDGKVS
AKTGALQGVYNLAGFITTASGQRMAFVQFLSGYAVPPEDQKNRRAPLVRFESRLYKDIYQ
NN
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgcatttttcacgaattgtcagtggattggcctgtgctattgcgatcaatatcagcata
tctaatgccaatgcggctcaggttgagaattacacacaatatctgcctgatggggcaaat
cttgcgttagttgtacaaaaaatcggggctactaccccagcaatagactatcacgctcag
cagatggcattgcctgccagtacgcaaaaagtcctgactgcgctggcggcattattgcag
cttgggccagattttcgcttcaataccacattggaaagccacggcacgattagtgatggg
attttacgtggcaatttgatagcacgttttgatggcgaccccactttaacacgccagcaa
ttgcgtaatatggtggcgacattaagaaaatcgggcgtgaaacaaatcgccggtgatttg
attattgatacgtcggtgtttgccagccatgacaaagctccaggttggccgtggaacgac
atgacacagtgctttagtgcgccgcctgcggccgcgattgtcgatcgtaactgtttttct
gtctctctttatagcgcaccgaatccaggtgacatggcatttatccgagtcgcatcttat
tacccggtgcagatgtttagtgaagttcgcaccttagccaaaggctcgcctgatgcgcaa
tattgcgaattagatgtggtgcctggtgaattaaaccgattcaccctgaccggctgcctg
acacagcgtagtgaaccgctgcccttggcctttgcagtacaaaatggggccagctatgcc
ggtgctattttgaaagatgaattgaaaaaagctgacatccaaattgatggcagtttacgc
cgccagacgacacccaatgccgctggaaccgtgttagctcaagctcaatcagcgccgtta
catgacttgctgaaaatcatgttgaaaaaatctgacaacatgattgctgacaccgtattt
agaaccattggccatcagcgttttggcgtgccgggaacgtggcgcgctggcgctgatgcg
gtacgccaggtgttgcgacaaaaagcaggtgtggatctggggaacagtattgtggtggat
ggttcgggcttatcacgccataacctgatttcaccggcaaccatgatgcaggccttacag
tatatagctcagcatgatcaagaacttaactttatctcaatgctgccattatcaggctac
gacggcacattacgctatcgtggtgggttgcacgaagcaggtgttgacggcaaagtttca
gctaaaacaggcgcattacaaggcgtttacaatttggccggatttattactaccgccagt
gggcaacgtatggcttttgtgcaattcttgtcaggctacgctgtgccacctgaagatcaa
aaaaatcgccgcgcgccattggtgcgtttcgaaagccgactgtataaagacatttatcag
aacaattaa
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