Yersinia enterocolitica subsp. palearctica 105.5R(r) (serotype O 9): YE105_C0461
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Entry
YE105_C0461 CDS
T01480
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
yep
Yersinia enterocolitica subsp. palearctica 105.5R(r) (serotype:O:9)
Pathway
yep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
yep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
YE105_C0461
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
yep03019
]
YE105_C0461
03009 Ribosome biogenesis [BR:
yep03009
]
YE105_C0461
Enzymes [BR:
yep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
YE105_C0461
Messenger RNA biogenesis [BR:
yep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
YE105_C0461
Ribosome biogenesis [BR:
yep03009
]
Prokaryotic type
rRNA helicases
YE105_C0461
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_C
ResIII
CMS1
DRTGG
UTP25
Motif
Other DBs
NCBI-ProteinID:
ADZ40959
LinkDB
All DBs
Position
547031..549004
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AA seq
657 aa
AA seq
DB search
MTTELETSFADLGLSAPILSALTDLGYEKPSPIQLECIPHLLNGRDVLGMAQTGSGKTAA
FGLPLLHNIDPSLKAPQVLVLAPTRELAIQVAEALSSFSKHMNGVNVVALYGGQRYDVQL
RALRQGPQVVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVENILAQIPA
EHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSMTTRPDISQSYWVVDGVRKNDALVRF
LEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQAAREQTLERLKNGRLDIL
IATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVDRRERRLLQN
IERTMKMTIPPVQLPNAELLGERRLAKFAAKVGQQLESSDLDMYRALLAKLQPEEGFDIE
TLAAALLKMAQGERPLILPPEAPRRPQREFNTRDDRGSDRGRDRNDSRREPRSDSRDGGE
RPARRERRDVGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIEL
PKGMPGEMLSHFTRTRILNKPLNMQLLGDAQPHERRERPAGGNGGERRGGGAGRSFGGER
RDGAAGAPPRRSFGSDRAPAGAGEQRRGNRDGQRPAAPRRDDAAAPAAPARRRFGDA
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atgactactgagcttgaaacctcttttgctgatctggggctgtccgctccaattctttct
gctctgactgatcttggttatgaaaaaccatctcctatccagttggagtgtattccacac
ctgttgaacggccgtgatgttctcggcatggcgcaaaccggtagtggcaaaacagccgca
tttggtctgccgctgttacacaacattgatccaagcctgaaagcaccgcaagtgttagta
ctggctccaactcgtgagttggctattcaagttgctgaagcattatctagcttctctaaa
catatgaacggcgttaacgtggttgctctgtatggtggccagcgttatgacgttcaatta
cgtgctttgcgtcaggggccacaagttgttgttggtaccccaggtcgtctgttagaccat
ctgaaacgcggtacccttaacttgtccaacctgagtggtttagtgttggatgaagcagat
gaaatgctgcgcatgggctttatcgaagacgtggaaaatattctggcgcagatcccggct
gaacatcagaccgcgctgttctctgccactatgccagaagcgattcgtcgtattacccgt
cgctttatgaaagagccacaggaagttcgcattcagtctagcatgactacccgtcctgat
atcagccagagctattgggttgtagacggtgttcgtaaaaacgatgcattggttcgtttc
ctggaagctgaagattttgacgctgctattattttcgttcgtaccaaaaatgcgacgctg
gaagtggctgaagctttggaacgtagcggttataacagcgctgcattaaatggtgacatg
aaccaggctgcgcgtgagcagactcttgaacgcctgaaaaatggtcgtttagatattctg
attgcaactgatgttgcggctcgtggtttggacgttgagcgcatcagcctggtagtaaac
tatgatatccctatggattcagagtcttatgtccaccgtatcggtcgtaccggtcgtgct
ggtcgcgctggtcgtgcattactgttcgttgatagacgtgaacgtcgtctgttgcagaac
attgaacgtactatgaagatgactattccaccagtccaattgccaaacgcagaattactg
ggcgaacgtcgcttagctaaatttgcggctaaagttggccaacagctggaaagcagtgat
ttggatatgtaccgtgcgttgctggctaaactgcaaccagaagaagggtttgatattgaa
actctggctgctgcactgctgaaaatggcacagggcgagcgtcctctgattctgcctcca
gaagcaccacgtcgtccacagcgtgaatttaatactcgcgatgaccgtggtagcgatcgc
ggtcgtgaccgtaatgatagccgtcgcgaacctcgttctgacagccgtgacggtggcgaa
cgtccagcacgtcgcgaacgtcgtgatgttggtgagatggaactgtaccgcattgaagtt
ggccgcgatgatggtgttgaagttcgtcatatcgttggcgctatcgctaacgaaggtgat
atcagcagccgttacatcggtaacatcaagctgtttgcttcacattcaactattgaactg
ccgaaaggcatgccgggcgaaatgttatctcacttcactcgcacccgtatcctgaacaag
ccgctgaacatgcagttgttgggtgatgcacagccgcatgagcgccgtgagcgtccagct
ggtggtaatggtggtgagcgtcgtggcggtggtgctggccgttcattcggtggcgaacgt
cgtgacggtgccgctggtgctcctcctcgccgttcattcggtagtgaccgtgctccagcc
ggtgctggcgaacagcgtcgtggcaatcgtgatggtcagcgcccagctgcaccacgtcgt
gatgatgccgcagcgcctgctgcacctgctcgtcgtcgtttcggtgacgcataa
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