Yersinia intermedia: CH53_1351
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Entry
CH53_1351 CDS
T03608
Name
(GenBank) mechanosensitive ion channel family protein
KO
K22051
miniconductance mechanosensitive channel
Organism
yin
Yersinia intermedia
Brite
KEGG Orthology (KO) [BR:
yin00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
yin02000
]
CH53_1351
Transporters [BR:
yin02000
]
Other transporters
Pores ion channels [TC:
1
]
CH53_1351
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MscS_TM
MscS_porin
MS_channel_2nd
MS_channel_3rd
MS_channel_1st
Motif
Other DBs
NCBI-ProteinID:
AJJ18390
LinkDB
All DBs
Position
1539489..1542785
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AA seq
1098 aa
AA seq
DB search
MLSLPLHAATQPNEDQLRQELKQAETNKGMPNQTEIVQALQSALSWLADAKESDIRAQQY
QKAIDDFPKLTRELRQELAQEGDKPLPVPSNMSTSELEQQVLQISSQLLELSRLSQQEQD
RAREISESLSQLPQQQSEARRILAEISARLQAQSNPANPVAQAQFALLQAEAVARKAKAN
ELELSQLSANNRQELSRLRAELYKKRQERVDAQLQSLRNNLNNQRQQAAEQALERTELLA
EQGGDLPESIIKELQTNRELSQALNQQAQRIDLISSQQRQAVAQTQQVRQALSTIREQAQ
WLGVSTALGETLRAQVARLPEVPKSQQLDRDMAQLRVQRLLYEDMLEKLQQQNVKLKQND
GTPLTTEQQRILDAQWRTQRELLNSLLSGYDTQILELTKLKVANSQLVDALSEVREATHR
YLFWVADVSPISLSYPINVAHDLTRLLSLDTFAQLSRAFVMMMTSQETLLPVIAALLFVG
FSISSRRHYHAFLERASSRVGKVTQDHFSLTLRTVFWSILVALPLPVLWAALGYGLQNAW
SYPMAIAIGNAVTATVPVLWLFMISASFAHPHGLFITHFRWSPAQVGRAMRFYRMSVWLI
IPLMMALITFENYNDREFAGTLGRLCFILLCVALSLVTNSLKRAGIPLYLDKKGSGENII
NVALWGLLLSAPLIAALASALGYLTTSQALLARLETSVAIWFFLLVVYHIIRRWMLIQRR
RIAFDRAKQRRADILAQRARGEEDTPHNNSTEGSIDVEEPVIDLDVISAQSLRLVRSILT
MIALVSVIALWSEIHSAFGFLENIRLWDVSSTINGIESVQAITMGSLLIAILVMVVTAQL
VRNLPALLELALLQHLDLTPGTGYAISTITKYLLILFGGLLGFSMLGIEWAKFQWLVAAL
GLGLGFGLQEIFANFVSGLIILFEKPIRIGDTVTIRDLTGSVTKINTRATTISDWDRKEI
IVPNKAFITEQFINWSLSDSITRVVLTVPAPAETSSEEVTEVLLTAARRCTLVLDNPPPE
VYLVDLQQGIQIFELRIYAAEMGHRMPLRHEIHQLILAGYREHGITLPFPPFQARLETLG
RGAGRTITSGRGRTPGSL
NT seq
3297 nt
NT seq
+upstream
nt +downstream
nt
ttgctgtctctgccgttacatgcggcaactcagcctaatgaagatcagctcagacaagag
ctgaaacaggctgaaaccaataaagggatgccaaatcagaccgaaattgttcaggcgctg
caatcggctcttagctggctggcggatgcaaaagagtctgatatccgcgcacagcagtat
caaaaagccattgatgatttccccaagctgacccgcgagttacgccaggaattggctcag
gaaggggataaacccctgcccgtccccagtaacatgtccacatccgagctggaacaacaa
gtgctgcaaatcagcagccagttgttggaattaagccgtttgtcgcaacaggaacaggac
cgggcgcgggaaatcagtgagtccctcagccagctgcctcagcagcaatcagaagctcgc
cgaattctggctgaaatcagcgcccggcttcaggcacaaagcaaccctgcaaatccagtc
gctcaggcacaatttgcattactgcaagcagaagcggtggcccgtaaggccaaagccaat
gaactggaactttctcagctctccgccaacaaccggcaagagctgtcacggctacgtgcc
gagttatacaaaaagcgtcaagagcgggtagatgctcaactccaaagtttacgtaataat
ctgaataaccaacgccagcaggcggcagaacaggctcttgaacgcaccgagttactggcg
gaacaagggggcgacttacctgagtcaattattaaggaactgcaaaccaaccgcgagctg
tcgcaagcgctgaatcaacaggcgcaacgcattgatctgatctcttcgcaacaacggcaa
gcggtagcccagacccaacaagtccggcaagctctcagcactattcgtgaacaggcccag
tggctgggcgtttcaaccgcattaggggaaacactgcgggcacaggttgcaagattgcct
gaagtgccgaaatcccagcagctggatcgtgatatggcacagttgcgggttcaacgcctg
ctatatgaagatatgctggagaagttgcagcagcaaaacgtcaaattaaaacaaaatgat
ggcacaccgctcaccaccgagcagcagcggatccttgatgctcagtggcgcacacagcgt
gaattgctgaactcgctactgtccggttatgacacccagatcctagaattaaccaagttg
aaagtggccaacagtcagttggtggatgcgctaagtgaggtgcgcgaggccactcaccgt
tatctattttgggtcgcagatgtcagcccaatatcgctgtcttacccgattaacgtcgct
catgacctgacccgcttgctgtcgctggatacatttgcgcagttaagtcgcgcgttcgtc
atgatgatgaccagccaggagacgctgctaccggtcatcgccgccctgctgtttgtcggt
ttcagtatcagctcgcgtcgccactatcatgccttcctggagcgtgctagcagccgagta
ggtaaggttacgcaagaccatttctctctgacgttacgcaccgttttctggtcaattctg
gtggcactgccgctgccggtgttgtgggccgctctcggttatggcctgcaaaacgcctgg
tcatatccaatggcgatcgccattggtaatgccgtcacagccaccgtgccagtactgtgg
ttgtttatgataagtgcctcgtttgcacatcctcatggcctgtttatcacccacttccgc
tggtcaccagcgcaggttgggcgggcaatgcgtttctatcgcatgtctgtgtggttgatt
atcccattgatgatggcgctaattacttttgagaattataacgaccgtgaatttgcgggc
accctaggccgcttgtgctttattttgctgtgtgttgccttaagtctggtgaccaatagc
ctgaaacgggcgggtattccgctctatctggataaaaaaggctcaggtgaaaacatcatt
aatgtggcgttatgggggctactgctgtctgcgccactgattgctgcactggcctcggca
ctcggttatctcaccacctcacaggcgctgctggcgcgtttggaaacctcagttgccatc
tggttcttcctgttggtggtttaccatattatccgccgctggatgttaattcagcgccgc
cgtattgcctttgaccgcgccaaacagcggcgcgccgatattctggcgcagcgcgcacgt
ggtgaagaagatacaccgcacaataacagtaccgaagggtccattgatgttgaggaaccg
gtcattgatctggatgtgatcagcgcgcagtccctgcggctagtgcgatcgatcctgacg
atgatcgccttggtttcagtgatcgctctgtggtctgagattcattcagcttttggtttc
ttggaaaatattcgcctgtgggatgtgtcatccaccattaacggtattgagtcagtacag
gcgatcaccatgggatccctgttgatcgctatcttagtgatggttgtgacggctcagtta
gtgcgcaatctgcctgccctattggaactggcgctgttgcagcatctggatctgacaccg
ggtaccggttatgccatctccaccatcaccaaatatctgttgatcctgttcggcggcttg
ctcggtttctctatgctggggatcgaatgggcgaaattccaatggttggttgccgcactt
ggtttaggtttggggttcggtttgcaggagatttttgccaacttcgtttctggcctgatc
attttgttcgagaaaccaatccgtatcggcgataccgtgaccatacgtgatctcaccggt
agcgtgaccaaaatcaatacccgtgccacgactatctctgactgggatcgcaaagaaatt
atcgtgccgaataaagcatttattactgagcaatttattaactggtcattgtcggattca
attacccgtgtggtactaacagtaccggcaccggctgaaaccagcagtgaggaagtgact
gaggtgctacttactgctgcacgccgctgtactttggtattggataacccgccgccagag
gtctatctggttgatcttcagcaagggattcagattttcgaactgcgtatttacgccgcc
gaaatgggccaccgtatgccactgcgccatgagatccaccagttgattctggccggttac
cgtgagcacggtattactctgccattcccacccttccaggctcggttggaaacgctgggg
cgtggcgctggccgcactattacttcagggcgcggccgcacaccgggtagcttgtaa
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