KEGG   Yersinia rochesterensis: CH54_1089
Entry
CH54_1089         CDS       T03609                                 
Name
(GenBank) hypothetical protein
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:3.6.4.13]
Organism
ykr  Yersinia rochesterensis
Pathway
ykr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ykr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CH54_1089
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ykr03019]
    CH54_1089
Enzymes [BR:ykr01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.4  Acting on acid anhydrides to facilitate cellular and subcellular movement
    3.6.4.13  RNA helicase
     CH54_1089
Messenger RNA biogenesis [BR:ykr03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     CH54_1089
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 UvrD-helicase AAA_22 Shikimate_DH
Other DBs
NCBI-ProteinID: AJJ34744
LinkDB
Position
complement(1189408..1190763)
AA seq 451 aa
MSFDSLGLNADILRAVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL
QLLSQDQQPIKGRRPVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINPQMM
KLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAK
RQNLLFSATFSDEIKGLASKLLHNPASVEVARRNTASEQIAQSVHFVDKNRKRELLSQMI
GEGNWQQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIRVLV
ATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLLRDI
ERLLKREIPRIALDGYEPDPSIKADPIQNGRQGRGAQRPGMGRGSSAGRPQNGGGAAGRG
DSRTSRPRSQADGQRRPAGPSSRGRSRNPGE
NT seq 1356 nt   +upstreamnt  +downstreamnt
atgtcatttgattctctcggcctaaacgccgacatcctgcgtgctgttgaagagcagggc
taccttgtgccgacaccgattcaacgtcaggcaatccctgtggtactggaaggtcgtgat
ttaatggccagtgcacaaaccggtacgggtaaaaccgctggtttcaccttgccgttgttg
caactgctgagtcaggatcaacagccaattaaaggccgtcgtccggtgcgtgcgttgatt
ttgacgccaacccgcgaactggctgcgcagattgacgaaaacgtacagagttacagcaaa
tacctgaagctgcgttcgctggtggtatttggtggcgttagcattaacccacagatgatg
aaattgcgcggtggtgtggatattttggtcgccacccctggccgtttactggatctggaa
catcagaacgctgttgatttgtccaaaattgaaattttggtattggacgaagctgaccgc
atgctggatatgggctttattcacgatatccgtcgtgtcttggccaaactgccagccaaa
cgccaaaacttgctgttctctgctactttctctgatgagattaaagggttagccagcaag
ttgttgcataaccctgcttctgttgaagtcgcgcgccgtaacacagcgtctgaacaaatt
gcacaaagcgttcattttgttgataaaaaccgcaagcgtgagttgctgtctcagatgatt
ggcgaaggcaactggcaacaagtattggtgttcaaccgcaccaaacacggcgctaaccat
ttagccgagcaattgaataaagacggtattacagccgccgcaattcacggcaacaagagc
caaggtgcgcgtacccgtgcgctggctgattttaaagatggtaaaatccgtgtattggta
gcgactgatatcgccgcgcgtggtttggatattgatcagttacctcatgtagttaactat
gagttgccaaacgtaccggaagattacgtgcaccgcattggccgtacaggccgcgcggaa
cgcactggcgaggcgatttcactggtttgtgttgatgaacataaactgttgcgtgatatt
gagcgcttactgaaacgtgaaatcccgcgtattgcacttgatggctatgagccggaccca
agcattaaagcggatccgattcaaaatggtcgtcagggccgtggtgcgcagcgccctgga
atgggccgtggtagcagtgcgggtcgtccacaaaatggtggtggcgcagcaggtcgcggt
gatagccgtaccagccgtccacgcagccaggctgatggtcaacgccgcccagcaggcccg
tcttcacgtggtcgtagccgcaatccaggcgaataa

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