Yersinia rochesterensis: CH54_1089
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Entry
CH54_1089 CDS
T03609
Name
(GenBank) hypothetical protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
3.6.4.13
]
Organism
ykr
Yersinia rochesterensis
Pathway
ykr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ykr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CH54_1089
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ykr03019
]
CH54_1089
Enzymes [BR:
ykr01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.4 Acting on acid anhydrides to facilitate cellular and subcellular movement
3.6.4.13 RNA helicase
CH54_1089
Messenger RNA biogenesis [BR:
ykr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CH54_1089
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
AAA_22
Shikimate_DH
Motif
Other DBs
NCBI-ProteinID:
AJJ34744
LinkDB
All DBs
Position
complement(1189408..1190763)
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AA seq
451 aa
AA seq
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MSFDSLGLNADILRAVEEQGYLVPTPIQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL
QLLSQDQQPIKGRRPVRALILTPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINPQMM
KLRGGVDILVATPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAK
RQNLLFSATFSDEIKGLASKLLHNPASVEVARRNTASEQIAQSVHFVDKNRKRELLSQMI
GEGNWQQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKDGKIRVLV
ATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAERTGEAISLVCVDEHKLLRDI
ERLLKREIPRIALDGYEPDPSIKADPIQNGRQGRGAQRPGMGRGSSAGRPQNGGGAAGRG
DSRTSRPRSQADGQRRPAGPSSRGRSRNPGE
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgattctctcggcctaaacgccgacatcctgcgtgctgttgaagagcagggc
taccttgtgccgacaccgattcaacgtcaggcaatccctgtggtactggaaggtcgtgat
ttaatggccagtgcacaaaccggtacgggtaaaaccgctggtttcaccttgccgttgttg
caactgctgagtcaggatcaacagccaattaaaggccgtcgtccggtgcgtgcgttgatt
ttgacgccaacccgcgaactggctgcgcagattgacgaaaacgtacagagttacagcaaa
tacctgaagctgcgttcgctggtggtatttggtggcgttagcattaacccacagatgatg
aaattgcgcggtggtgtggatattttggtcgccacccctggccgtttactggatctggaa
catcagaacgctgttgatttgtccaaaattgaaattttggtattggacgaagctgaccgc
atgctggatatgggctttattcacgatatccgtcgtgtcttggccaaactgccagccaaa
cgccaaaacttgctgttctctgctactttctctgatgagattaaagggttagccagcaag
ttgttgcataaccctgcttctgttgaagtcgcgcgccgtaacacagcgtctgaacaaatt
gcacaaagcgttcattttgttgataaaaaccgcaagcgtgagttgctgtctcagatgatt
ggcgaaggcaactggcaacaagtattggtgttcaaccgcaccaaacacggcgctaaccat
ttagccgagcaattgaataaagacggtattacagccgccgcaattcacggcaacaagagc
caaggtgcgcgtacccgtgcgctggctgattttaaagatggtaaaatccgtgtattggta
gcgactgatatcgccgcgcgtggtttggatattgatcagttacctcatgtagttaactat
gagttgccaaacgtaccggaagattacgtgcaccgcattggccgtacaggccgcgcggaa
cgcactggcgaggcgatttcactggtttgtgttgatgaacataaactgttgcgtgatatt
gagcgcttactgaaacgtgaaatcccgcgtattgcacttgatggctatgagccggaccca
agcattaaagcggatccgattcaaaatggtcgtcagggccgtggtgcgcagcgccctgga
atgggccgtggtagcagtgcgggtcgtccacaaaatggtggtggcgcagcaggtcgcggt
gatagccgtaccagccgtccacgcagccaggctgatggtcaacgccgcccagcaggcccg
tcttcacgtggtcgtagccgcaatccaggcgaataa
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