Yersinia pestis Pestoides F (biovar Antiqua): YPDSF_3864
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Entry
YPDSF_3864 CDS
T00505
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ypp
Yersinia pestis Pestoides F (biovar Antiqua)
Pathway
ypp03030
DNA replication
ypp03410
Base excision repair
ypp03420
Nucleotide excision repair
ypp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ypp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
YPDSF_3864
03410 Base excision repair
YPDSF_3864
03420 Nucleotide excision repair
YPDSF_3864
03430 Mismatch repair
YPDSF_3864
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ypp03032
]
YPDSF_3864
03400 DNA repair and recombination proteins [BR:
ypp03400
]
YPDSF_3864
Enzymes [BR:
ypp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
YPDSF_3864
DNA replication proteins [BR:
ypp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
YPDSF_3864
DNA repair and recombination proteins [BR:
ypp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
YPDSF_3864
NER (nucleotide excision repair)
GGR (global genome repair) factors
YPDSF_3864
MMR (mismatch excision repair)
DNA ligase
YPDSF_3864
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
YPDSF_3864
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
DUF3701
HHH_5
HHH
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ABP42207
UniProt:
A4TSE5
LinkDB
All DBs
Position
complement(4428615..4430318)
Genome browser
AA seq
567 aa
AA seq
DB search
MNILNLKIIMFLLISNTIVVGGAWATSTCPDWPATRIAVEINALEQQLNKWSAAYHQQGH
SPVTDDIYDQLQDKLRVWQSCRGLPDKTESQPIPGKGQFLHPVAHTGLKKLKDETALTRW
MAGRKNLWVQPKVDGVAVTLVYHGGKLVQLLSRGNGVKGQNWTEKAPFISAIPQYIANAP
ALLTLQGELFLLMDGHQQAKSGGVNARSTVAGALMRKSPSPLLAQVGVFIWAWPDGPTTM
KEKVALLQVMGFPFTAKYSEPVMSHLDVVQWRQFWFQAPLPFVTDGVVVRQEEEPAGRYW
QATPGQWSMAWKYPPLQHIAEVKDIHFTLGRTGKGTVVLEVLPIKIDDKWIRRVNIGSVT
RWKQWDIAPGDHITLALAGHGIPRLDNVVWRVHQRNTITAPNWDKFHQLSCFQRLPHGCE
PQFLSRLIWLSGPGGLDIGGIGGGFWQELIHHELINDLVGWLLLTPEQIASIPGIGNARA
EKIYQQFQRAKQQPFSRWLLALGFPQVVSVDAQWQVVLRRSLSEWATMAGIGQMRAKQIK
HFLDHPDVQALADFLSTQKVVGFELTE
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgaacatactgaatctaaagataataatgttcctattaatatctaacaccatagtggtg
ggcggtgcttgggctacatcaacatgccctgattggcctgcaaccagaatagcggttgag
attaacgcgttggagcaacagttgaataagtggtcggccgcttaccatcagcaaggccat
agcccggtcacggatgacatttatgatcaattacaggacaaattacgtgtgtggcaatcc
tgtagggggttacctgataagacggaaagccagccgatccccggcaaagggcaatttctt
cacccagttgcccataccgggttaaaaaaactcaaagatgaaaccgccctcacaaggtgg
atggcggggcggaaaaatctctgggtacaacccaaggtcgacggtgtggcagtgacactg
gtttatcacggggggaaattggtgcaacttcttagtcgaggaaatggagtaaaaggtcaa
aactggacagaaaaagcgccatttatttctgctattcctcaatatattgcaaatgcgcct
gcactattaacgttgcaaggggagttgtttctactgatggatggccaccagcaagcaaaa
tcgggtggggtgaatgccagatcaacggtggcaggtgcactgatgcgcaaatctccgtct
ccgctattagctcaagttggggtctttatttgggcatggcctgatggcccaacaaccatg
aaagagaaggtggcactattacaggtaatgggttttccttttacagctaaatacagcgag
cccgtcatgtcgcatcttgatgttgtgcaatggcgtcagttctggtttcaagcaccactg
ccgtttgtcaccgatggtgttgtggtcaggcaagaggaggagccagctggtcgttattgg
caggcaacaccggggcagtggtctatggcgtggaagtatccgcctttgcaacacattgcc
gaagtaaaagatattcattttacccttggacgaacgggtaaaggcacggtggtattagag
gttttaccgataaaaattgatgataaatggattcgtcgagtgaatattggttcggtcacc
cgttggaaacaatgggacatcgctcctggtgatcacattacattggcacttgccgggcat
ggtatccctcggctagataacgttgtctggcgagtacaccaacggaatactattacggca
cccaattgggataaattccatcagctcagttgctttcaacgcttaccacatggctgtgaa
cctcagtttttatcccgcttgatatggcttagtggcccaggggggctagatattggcggc
atcggtggcggcttttggcaagagcttattcaccatgagttaattaatgatttggtcgga
tggttattactaacaccagagcaaattgcaagtatccctggaattggaaatgcgcgggct
gaaaaaatttatcaacagtttcaacgggcaaagcagcaacccttttctcgttggttgctg
gcattggggttcccgcaggttgtttccgttgacgcgcagtggcaggttgtattgcgccgg
agtctatctgaatgggccaccatggccgggattgggcaaatgagagcaaaacaaattaag
cattttttggatcaccccgacgtacaagcactggctgatttcttatctactcagaaagtt
gttgggttcgagctcacagagtaa
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