Yersinia pestis A1122: A1122_07980
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Entry
A1122_07980 CDS
T01831
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
ypt
Yersinia pestis A1122
Pathway
ypt02020
Two-component system
ypt02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ypt00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
A1122_07980
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
A1122_07980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ypt03021
]
A1122_07980
Transcription machinery [BR:
ypt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
A1122_07980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Motif
Other DBs
NCBI-ProteinID:
AEL72247
LinkDB
All DBs
Position
complement(1765749..1767182)
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AA seq
477 aa
AA seq
DB search
MKQGLQLKFSQQLAMTPQLQQAIRLLQLSTLELQQEIQLALESNPLLEQTDLHEEIDAKE
TVDSESLDTREALEQKDMPEELPLDATWDEIYTAGTPSGMGNDYSDDELPVYQGETTQTL
QDYLMWQVDLTPFTETDAAIATSIVDAVDDTGYLTVPLEDILESMGDENVALDEVEAVLK
RIQHFDPIGVAARNLRECLLVQLSQYAKDTPYLAEARLIVSEYLDLLGNHDFRMMIRLSR
LKEDTLKEAIALIQSLDPRPGQSINTGESEYVIPDVLVRKEKGIWTVELNADSIPRLKVN
QQYAAMGNSVRNDSDGQFIRSNLQEAKWLIKSLESRNETLLKVARCIVEQQVEFFEKGAE
FMKPMVLADIAQAVDMHESTISRVTTQKFLHSPRGIFELKYFFSSHVNTDSGGEASSTAI
RALVKKLVAAENPAKPLSDSKLTTLLCEQGIMVARRTVAKYRESLSIPPSNQRKQLV
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaaggtctgcaactcaagttcagccaacaactggcgatgactccgcagcttcag
caagctattcgcttgttgcaactttcgacgcttgaactccagcaggagattcagctcgcg
ctggagagcaacccccttcttgagcaaacggaccttcatgaagagatagatgctaaggaa
accgtggacagtgaatcgctggatacccgcgaagcactagaacaaaaggatatgccggaa
gaattaccgctagatgccacctgggatgagatttacaccgcaggtaccccatccggcatg
ggcaatgattacagtgacgatgaactgcccgtctatcagggtgaaaccacccaaacactg
caagactatctgatgtggcaggtggatttaacaccgttcactgagaccgacgccgccatt
gcgacttctatcgttgacgctgttgatgacactggctatctcactgtgccgctggaagat
attctggaaagcatgggtgatgagaacgtagcgctagacgaagtggaagcggtactcaaa
cgtattcagcattttgatcccatcggtgtcgctgcccgtaacttgcgcgaatgcttgctg
gtacagttatcacaatatgccaaagacaccccttatttggccgaagcgcgtctgatcgtc
agcgaatatttagatttgctaggcaaccatgatttccgcatgatgatccgcttgagtcgg
ctgaaagaagatacacttaaagaagccatcgcgctgatccaatcactggatccacggcca
ggtcagtcgatcaataccggggagtctgagtatgtcatcccggatgttctggttcgtaaa
gagaaaggtatctggacggtggagctgaatgccgatagcatcccacgtctaaaagttaac
caacaatacgcagcgatgggcaatagcgtccgtaatgacagtgacgggcagtttatccgt
agcaatttgcaagaagcaaaatggttgatcaaaagccttgaaagccgcaatgaaacgctg
ctaaaagtagcaagatgtattgtagaacagcaagtcgagttctttgagaaaggtgcagag
tttatgaaacccatggtactggctgatatcgcccaggctgtggatatgcatgaatcaaca
atctctcgagtgaccacgcagaaattcttgcacagtccccgagggatttttgaactgaag
tatttcttctctagccacgtcaataccgatagtgggggcgaagcctcttctacggcgatc
cgggcgctggtgaagaaattagtggcggcagaaaaccctgccaagccattaagcgatagt
aaactaaccactttattatgtgaacaaggcattatggtagcacggcgcaccgtcgcaaaa
taccgagagtcgttatccatccctccgtctaatcaacgtaaacagttggtttga
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