Yersinia ruckeri Big Creek 74 (serotype O2): UGYR_08775
Help
Entry
UGYR_08775 CDS
T03887
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
yrb
Yersinia ruckeri Big Creek 74 (serotype O2)
Pathway
yrb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
yrb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
UGYR_08775 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
yrb03021
]
UGYR_08775 (rpoB)
03400 DNA repair and recombination proteins [BR:
yrb03400
]
UGYR_08775 (rpoB)
Enzymes [BR:
yrb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
UGYR_08775 (rpoB)
Transcription machinery [BR:
yrb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
UGYR_08775 (rpoB)
DNA repair and recombination proteins [BR:
yrb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
UGYR_08775 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
AKA38481
UniProt:
A0A085U3W6
LinkDB
All DBs
Position
complement(1938401..1942429)
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQDPEGQHGLEAAFRSVFPIQ
SYSGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALSFTTAQILDLFFDKVVFEIRDNKLQME
LIPERLRGETASFDIEANGKVYVEKARRITARHIRQLEKDGVDSIEVPVEYIAGKVVAKD
YIDENTGELICAANMELSLDLLAKLSQAGHKRIETLFTNDLDHGAYISETLRVDPTSDRL
SALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAVGRMKFNRSLLRDEIEGSGIL
SKEDITEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVRDGLVT
DEINYLSAIEEGNFVIAQANSNLDEDGRFIEDLVTCRSKGESSLFSRDQVDYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTSVAKR
GGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVNLGEPIERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTIIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
TEELQILEAGLFARIHAVLVSGGIEADKLSKLPRDRWLELGLTDEDKQNQLEQLAEQYDE
MKSEFEKKMDAKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGEKINAMLKKQEEVAK
LREFIQKAYDLGDNVCQKVDLSTFTDDEVLRLAENLKKGMPIATPVFDGATEKEIKELLQ
LGGLPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMP
ESFNVLLKEIRSLGINIELEEE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgagaaaaaacgtattcgtaaggattttggtaaacgtccacaa
gttttggatataccttatctcctttctatccaacttgactcgttccagaaatttatcgag
caagatcctgaaggacagcacggcctagaagcggcattccgttctgtttttcctatccag
agctacagtggcaattcggagctgcaatacgttagctaccgtcttggtgagccagtgttt
gacgtcaaagagtgccagatccgtggtgtgacgtattcagcaccgctgcgcgttaagctg
cgtctggttatctatgagcgggaagctcctgaaggtacggttaaagacatcaaggaacaa
gaagtctacatgggtgaaattccactcatgaccgagaatggtacctttgtgattaacggt
actgagagggttatcgtatctcagctgcaccgtagtcctggcgtattctttgacagtgat
aaaggtaagacccattcatcgggtaaagtgctgtataacgcacgaattattccttatcgc
ggttcatggttggatttcgagtttgacccgaaagacaatctttttgtacgtattgaccgt
cgccgtaaattacctgcgaccatcattttacgtgcattaagctttaccactgcccagatc
ctcgatctgttctttgataaagttgtatttgaaattcgtgacaacaagctgcagatggaa
ctgattccagagcgtctgcgcggtgaaacggcttcctttgatatcgaagcaaatggcaaa
gtttacgtcgagaaagcgcgtcgtattactgctcgtcatatccgtcagcttgaaaaagat
ggcgtggatagcatcgaagtcccggttgaatacattgccggtaaagttgttgctaaagac
tacatcgatgagaacaccggtgaattgatctgtgcagccaacatggagctgtcactggat
ctgttggccaagctgagccaggctggtcacaaacgcattgaaactctgttcaccaatgac
ctggatcacggggcttatatctccgagaccctgcgcgttgacccaaccagcgatcgcttg
agcgctctggttgagatctatcgcatgatgcgtcctggtgagccaccaactcgcgaagca
gctgaaaatctgtttgagaacctgttcttctctgaagaccgctacgatttgtctgcggtt
ggccggatgaagttcaaccgttcattgctgcgtgacgagatcgaaggttccggtatcctg
agcaaagaagacatcacagaagtgatgaagaagctcatcgatatccgtaacggtaaaggc
gaagtggatgatatcgaccacttaggcaaccgtcgtattcgttccgttggtgaaatggct
gaaaaccagttccgtgttggtctggttcgcgttgagcgtgcagtgaaagagcgtttgtct
ctgggcgacctcgacacgttgatgcctcaggacatgatcaacgctaagccaatttcggct
gcggtgaaagagttcttcggttccagccagttgtcccaatttatggaccagaacaacccg
ttgtctgaaattacgcataagcgtcgtatttctgcattgggcccgggcggtttgacccgt
gaacgtgctggctttgaagttcgagatgttcatccgactcactatggtcgtgtatgtcca
atcgaaacgccagaaggtccaaacatcggtctgatcaactccttgtccgtgtacgcacag
accaatgagtatggtttcctggaaactccttatcgtcgcgtgcgtgacggtttggtgact
gatgaaatcaactatctgtctgctattgaagaaggcaacttcgttatcgctcaggcgaac
tccaacctggacgaagacggccgcttcatcgaagacttggtcacttgtcgtagcaaaggt
gagtcaagcctgtttagccgcgatcaagttgactacatggacgtttccactcaacaggtg
gtgtccgttggtgcttctctgattccgttcctggaacacgatgatgccaaccgcgccttg
atgggtgcgaacatgcaacgtcaagcggttcctactctgcgtgctgataagccgctggtg
ggtactggtatggaacgtgcagtagcggttgactctggggtaacctctgtagccaagcgt
ggcggtactgttcagtacgtagatgcatcccgtatcgtgattaaagttaacgaagacgag
atgtacccaggcgaagccggtattgatatctataacctgaccaagtacacccgttctaac
cagaacacctgtatcaatcagatgccgtgtgtaaatctgggtgagccaatcgagcgcggc
gacgtgctggcagatgggccatcaaccgatctgggtgaactggcgttgggtcagaacatg
cgcgtagccttcatgccttggaatggttacaacttcgaagattccatcttggtctccgag
cgtgtggttcaggaagatcgctttacaactatccacattcaagaattggcctgtgtgtcg
cgtgacaccaagctggggcctgaagagatcactgccgacatcccgaacgtgggtgaagct
gcgctctccaaactggatgaatccggtatcgtgtatatcggtgctgaagtgactggcggt
gacattctggttggtaaagtaacaccgaaaggtgaaacccaactgacaccagaagagaaa
ctgttacgtgcgatcttcggtgagaaagcgtctgatgttaaagactcttctctgcgtgta
ccaaacggcgtttccggtacgattatcgatgtgcaggtctttactcgcgatggcgtagaa
aaagacaaacgtgcgttggaaatcgaagaaatgcagctgaagcaggctaagaaagacctg
actgaagaattgcagattctggaagctggcctgtttgcacgtatccacgctgtgctggtt
tctggtggcatcgaagctgacaagctgagcaagctgccacgtgaccgctggttggaactg
ggtctgaccgacgaagacaagcaaaaccaactggaacagttggccgagcagtacgacgaa
atgaaatccgaattcgagaagaagatggatgccaaacgtcgtaagatcacccaaggcgat
gatttggcaccaggcgtgctgaaaatcgttaaagtgtatctggcggttaaacgtcagatt
caaccgggtgacaagatggcgggtcgtcacggtaacaaaggtgttatctccaagatcaac
ccgatcgaagatatgccttacgatgaaaacggtacgccggtagacatcgttctgaacccg
ctgggcgtaccatcgcgtatgaacatcggtcagattctggaaacccatttggggatggca
gcgaaaggtattggcgagaaaatcaacgccatgctgaaaaagcaggaagaagttgccaaa
ctgcgtgagttcatccagaaagcctacgatctgggcgacaacgtttgtcagaaagttgat
ctgagcaccttcactgatgacgaagtactgcgtctggctgagaacctgaaaaaagggatg
ccaatcgcaacaccagtcttcgatggcgcgacagaaaaagaaatcaaggaactgttacag
ctcggtggcctgccaacttctggtcagattaccttgtttgacggccgtaccggtgagcag
ttcgagcgccaggttactgtcggctacatgtacatgctgaaactgaaccacttggttgat
gataaaatgcatgcgcgttctaccggttcttacagcttggttactcagcagccgctgggt
ggtaaagctcagttcggtggtcagcgcttcggtgagatggaagtgtgggcgttggaagct
tatggtgccgcgtacaccttgcaggaaatgcttaccgtcaagtccgacgatgtaaacggc
cgtaccaagatgtataaaaacatcgtggatggcgatcaccgtatggaaccaggcatgccg
gagtccttcaacgtattgttgaaagaaatccgctcgctgggcatcaatatcgagctggaa
gaagagtaa
DBGET
integrated database retrieval system
