Yersinia rohdei: CH64_2640
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Entry
CH64_2640 CDS
T03610
Name
(GenBank) NAD-dependent DNA ligase adenylation domain protein
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
yro
Yersinia rohdei
Pathway
yro03030
DNA replication
yro03410
Base excision repair
yro03420
Nucleotide excision repair
yro03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
yro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CH64_2640
03410 Base excision repair
CH64_2640
03420 Nucleotide excision repair
CH64_2640
03430 Mismatch repair
CH64_2640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
yro03032
]
CH64_2640
03400 DNA repair and recombination proteins [BR:
yro03400
]
CH64_2640
Enzymes [BR:
yro01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CH64_2640
DNA replication proteins [BR:
yro03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CH64_2640
DNA repair and recombination proteins [BR:
yro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CH64_2640
NER (nucleotide excision repair)
GGR (global genome repair) factors
CH64_2640
MMR (mismatch excision repair)
DNA ligase
CH64_2640
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CH64_2640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH
HHH_2
DUF3701
HHH_5
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AJJ12234
LinkDB
All DBs
Position
2945700..2947397
Genome browser
AA seq
565 aa
AA seq
DB search
MRVQNIKILALLIVGFITWEVRAKPVCPEWSEKRASDEINILVKQLNQLDVAYHQQGISL
LDDDIYDQLQDKLHGWRECLGLPDKANNTLIPGDGKLLHPVAHTGLKKLKDENALADWMS
GREDLWVQPKVDGVAVTLVYQAGELIQLLSRGNGLKGLNWTDKAPFISAIPQHISMAPPW
LTLQGELFLQMDGHQQVQSGGVNARASVAGALMRKTMSPLLANLGVFIWAWPDGPKNLVE
KTTLLQEMGFPLAAKYSKPVTSSQDVMQWRDFWYQTPLPFVTDGVVIRQEEEPAGRYWRA
ASGNWSVAWKYPPLQKTTEIQDIHFTIGRTGKITVVLQVAPVKIDDKQIRRVNIGSLALW
RQWNIAVGDQVTITLAGQGIPRLENVVWRVSQREYLIPPEKDKFHPLSCFRLLPLECEPQ
FLSRLAWLSGPKGLDMRNVGRGFWREIVRHGLINDMVGWLSLTAEQIATVPGIGRVRAEK
IYQQFQNTRLKPFSQWLPALGFPLGGVVDSHWHPLQQRSIAEWRLISGIGAVRAKQINHF
LSHPEVQEMADFLSQQGIAGFRPEE
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgagagtgcaaaatataaaaatactagccttactgatagttgggtttataacttgggag
gtcagagccaaaccggtctgccctgaatggtcagaaaaaagagcctctgatgaaataaat
attttggttaagcagcttaaccagttggatgtggcttatcaccagcaagggattagcctg
ttggatgatgatatttacgaccagttgcaggataaattgcatgggtggcgagagtgtcta
gggctacccgataaagcgaataatactttaatacctggtgatgggaagttacttcatcct
gtggcccatactggattaaaaaaacttaaagatgaaaatgcactggctgactggatgtcg
ggacgagaagatctctgggtacaaccaaaagtagacggtgttgcggttacgctggtgtat
caagccggagaattgatacagcttcttagccgaggtaatggactgaaaggcctaaactgg
actgataaagcgccatttatttcagctattccgcaacatatttcaatggcacctccatgg
ttaactctgcaaggcgagctattcctgcaaatggacggacatcaacaggtgcagtcagga
ggagtcaatgccagggcctctgttgctggcgctctaatgcgtaagacgatgtcgccattg
ctggctaatcttggcgtttttatttgggcatggccggatggcccgaaaaatctggtggag
aaaaccacattgctgcaagagatgggcttccctttggcggctaaatacagcaaacctgtg
acctcaagtcaggatgtgatgcagtggcgggatttctggtatcaaactccgctgcctttt
gtaactgatggtgttgtcattcgccaagaggaagaacctgccggccgctattggcgggca
gcatccggtaactggtctgtggcgtggaaatatccaccattgcagaaaacgaccgaaatc
caagacattcattttactattggtcggacaggcaaaattactgtggttttacaggttgca
cccgtaaaaattgatgataaacagattcgacgggtgaatattggatccttagcactttgg
cgacaatggaatattgcagtgggagatcaagtcactatcacattggcggggcagggtatt
ccaaggctggaaaacgttgtctggcgagtaagccagcgtgaatatcttatcccgccagag
aaggataaatttcatccattgagttgttttcgtctattgcctcttgagtgtgaaccacag
tttctttcccgcttggcatggctcagtggccctaagggtttagatatgcgtaatgtaggc
cgtgggttttggcgtgagattgttcgtcatggacttatcaatgatatggttgggtggcta
tcattaactgcagagcaaattgcgacggtccccggtattgggcgagtacgggcagaaaag
atttatcaacaatttcaaaacacaagactgaagcccttttcccaatggctgcctgctttg
ggatttcctctggggggagtcgttgattctcactggcatcctctacaacaacgaagtatc
gctgagtggcgcttaatctctggtattggagccgtgcgggcaaaacaaattaatcatttt
ttgtctcaccctgaagtacaagagatggcggattttttatctcaacagggtattgccgga
ttccgacctgaagagtaa
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